RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 HNF4GQ14541 408 aa13.15□□□□□ -0.3
SQSTM1-213ENST00000510187 LTC4SQ16873 150 aa13.15□□□□□ -0.3
SQSTM1-213ENST00000510187 Q8TCH9 128 aa13.15□□□□□ -0.3
SQSTM1-213ENST00000510187 DDB2Q92466 427 aa13.15□□□□□ -0.3
SQSTM1-213ENST00000510187 CALYQ9NYX4 217 aa13.15□□□□□ -0.3
SQSTM1-213ENST00000510187 HRNRQ86YZ3 2850 aaPredicted RBP13.15□□□□□ -0.3
SQSTM1-213ENST00000510187 ARFGEF3Q5TH69 2177 aa13.15□□□□□ -0.31
SQSTM1-213ENST00000510187 PRSS46E5RG02 174 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 TMPRSS2O15393 492 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 IFNA10P01566 189 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 CGB3P0DN86 165 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 CGB7P0DN87 165 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 IRF2P14316 349 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 COL8A1P27658 744 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 TMEM30BQ3MIR4 351 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 OR10D4PQ8NGN7 298 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 GATAD1Q8WUU5 269 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 BTF3L4Q96K17 158 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 RAB1BQ9H0U4 201 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 HEYLQ9NQ87 328 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 RNF7Q9UBF6 113 aa13.14□□□□□ -0.31
SQSTM1-213ENST00000510187 A0A1W2PPV4 95 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 GGCTO75223 188 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 TYMSP04818 313 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 FAM3BP58499 235 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 RPS16P62249 146 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 COA6Q5JTJ3 125 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 OR4X1Q8NH49 305 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 ADTRPQ96IZ2 230 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 GPR61Q9BZJ8 451 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 TMEM140Q9NV12 185 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 PPP5D1E7EU14 171 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 THBS3P49746 956 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 RPL39P5Q59GN2 51 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 TREML4Q6UXN2 200 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 TMEM183AQ8IXX5 376 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 CCL17Q92583 94 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 CHODLQ9H9P2 273 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 GFOD1Q9NXC2 390 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 TCF19Q9Y242 345 aa13.13□□□□□ -0.31
SQSTM1-213ENST00000510187 IGHV3OR15-7A0A075B7D8 119 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 C15orf61A6NNL5 157 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 GFI1BQ5VTD9 330 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 KCNIP4Q6PIL6 250 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 LURAP1LQ8IV03 231 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 SDSLQ96GA7 329 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 IMMP2LQ96T52 175 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 PFDN5Q99471 154 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 GGTLC1Q9BX51 225 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 FOXA2Q9Y261 457 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 TENM4Q6N022 2769 aa13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 UTP20O75691 2785 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-213ENST00000510187 HELZ2Q9BYK8 2649 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 IGHV1-69-2A0A0G2JMI3 117 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 KBTBD11-OT1A0A1B0GTJ5 212 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 ZNF729A6NN14 1252 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 FNDC10F2Z333 226 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 HIST1H1BP16401 226 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 CDKN1AP38936 164 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 ZNF134P52741 427 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 EDDM3BP56851 147 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 LCN2P80188 198 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 POU2AF1Q16633 256 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 C17orf58Q2M2W7 97 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 FAM201AQ5SY85 155 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 SSX9Q7RTT3 188 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 TMEM170AQ8WVE7 144 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 ACY3Q96HD9 319 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 TMEM106BQ9NUM4 274 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 DCAF16Q9NXF7 216 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 USP9YO00507 2555 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 LRBAP50851 2863 aa13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 RAI1Q7Z5J4 1906 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-213ENST00000510187 RRHO14718 337 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 CXorf1O96002 111 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 STAG3L2P0CL84 134 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 STAG3L3P0CL85 134 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 NPPCP23582 126 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 ZNRF1Q8ND25 227 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 OR2T10Q8NGZ9 312 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 NEU4Q8WWR8 484 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 PSMG3-AS1Q96PY0 264 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 MGST2Q99735 147 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 FAM234AQ9H0X4 552 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 LINC00574Q9H8X3 128 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 LSM4Q9Y4Z0 139 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 PXMP4Q9Y6I8 212 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 TRAV38-1A0A0B4J264 116 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 GNB1P62873 340 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 LINC01551Q86U37 167 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 ZNF383Q8NA42 475 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 HIST1H2BLQ99880 126 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 NPVFQ9HCQ7 196 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 TMEM14BQ9NUH8 114 aa13.1□□□□□ -0.31
SQSTM1-213ENST00000510187 DCHS2Q6V1P9 2916 aa13.09□□□□□ -0.31
SQSTM1-213ENST00000510187 TRGV10A0A0A0MS01 117 aa13.09□□□□□ -0.31
SQSTM1-213ENST00000510187 TRAV20A0A0B4J274 112 aa13.09□□□□□ -0.31
SQSTM1-213ENST00000510187 TMEM178BH3BS89 294 aa13.09□□□□□ -0.31
SQSTM1-213ENST00000510187 SLC31A2O15432 143 aa13.09□□□□□ -0.31
SQSTM1-213ENST00000510187 FABP4P15090 132 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms