RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	FBXO24	O75426	580 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	ADAP1	O75689	374 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	HSPE1	P61604	102 aa	Known RBP	11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	C10orf99	Q6UWK7	81 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	MRPL41	Q8IXM3	137 aa	Known RBP	11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	COMMD1	Q8N668	190 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR5T1	Q8NG75	326 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR1S1	Q8NH92	325 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	NDUFA4L2	Q9NRX3	87 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	ZNF355P	Q9NSJ1	428 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	COA4	Q9NYJ1	87 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	TET2	Q6N021	2002 aa	Predicted RBP	11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123		A0A1B0GU03	582 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	SNRPGP15	A8MWD9	76 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	PPIF	P30405	207 aa	Known RBP	11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	CFHR3	Q02985	330 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	C19orf54	Q5BKX5	351 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	ASPHD1	Q5U4P2	390 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	TMEM65	Q6PI78	240 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	C11orf44	Q8N8P7	122 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	MINDY2	Q8NBR6	621 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR5M8	Q8NGP6	311 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123	CACFD1	Q9UGQ2	172 aa		11.42	□□□□□ -0.58
BRCA1-223	ENST00000494123		A0A1B0GW64	132 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	CGB1	A6NKQ9	187 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	IGHG4	P01861	327 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	PF4V1	P10720	104 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	SLC25A6	P12236	298 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	PRCD	Q00LT1	54 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	TATDN3	Q17R31	274 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	SPINK9	Q5DT21	86 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	HSD17B13	Q7Z5P4	300 aa	Predicted RBP	11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR10W1	Q8NGF6	305 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	FAM110D	Q8TAY7	271 aa	Predicted RBP	11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	WIPF2	Q8TF74	440 aa	Predicted RBP	11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	SRSF8	Q9BRL6	282 aa	Known RBP	11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	PLEKHA3	Q9HB20	300 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	ENY2	Q9NPA8	101 aa		11.41	□□□□□ -0.58
BRCA1-223	ENST00000494123	FAM25E	A8MYX2	175 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	SSNA1	O43805	119 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	NXPH3	O95157	252 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	ELANE	P08246	267 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	OR13C7	P0DN81	318 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	CD28	P10747	220 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	AREG	P15514	252 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	HOXA1	P49639	335 aa	Predicted RBP	11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	SPCS3	P61009	180 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	FOXE3	Q13461	319 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	OXA1L	Q15070	435 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	CXorf66	Q5JRM2	361 aa	Predicted RBP	11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	KHDC1L	Q5JSQ8	128 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	TTC9C	Q8N5M4	171 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	ZNF747	Q9BV97	191 aa		11.4	□□□□□ -0.58
BRCA1-223	ENST00000494123	C13orf42	A0A1B0GVH6	325 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	IGLC7	A0M8Q6	106 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	NPIPB5	A8MRT5	1133 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	SOX15	O60248	233 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	IGLV1-40	P01703	118 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	REG1A	P05451	166 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	DEFA4	P12838	97 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	PSMB6	P28072	239 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	KRTAP10-3	P60369	221 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	SRSF4	Q08170	494 aa	Known RBP	11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	AARD	Q4LEZ3	155 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	OR52E5	Q8NH55	327 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	TENM1	Q9UKZ4	2725 aa		11.39	□□□□□ -0.59
BRCA1-223	ENST00000494123	TCRBV4S1A1T	A0A5B7	111 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	C5orf51	A6NDU8	294 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	CEBPZOS	A8MTT3	80 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123		H3BUA1	57 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	CCS	O14618	274 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	PSMB8	P28062	276 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	ERH	P84090	104 aa	Known RBP	11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	WT1-AS	Q06250	92 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	IAH1	Q2TAA2	248 aa	Predicted RBP	11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	MS4A10	Q96PG2	267 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	SLA2	Q9H6Q3	261 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	ALG5	Q9Y673	324 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	C7orf66	A4D0T2	115 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	MPTX1	A8MV57	137 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	RPLP1	P05386	114 aa	Known RBP	11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	TPPP2	P59282	170 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	TNFRSF9	Q07011	255 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	SHISA2	Q6UWI4	295 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	LCNL1	Q6ZST4	164 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	CITED1	Q99966	193 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	GSKIP	Q9P0R6	139 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	HSPB7	Q9UBY9	170 aa		11.38	□□□□□ -0.59
BRCA1-223	ENST00000494123	GOSR2	O14653	212 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	CYB5B	O43169	146 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	PITX3	O75364	302 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	PRH1	P02810	166 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	TRGV3	P03979	118 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	CRYGC	P07315	174 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	CTRB1	P17538	263 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	SNCA	P37840	140 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	RAB9A	P51151	201 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	CD83	Q01151	205 aa		11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	PDLIM3	Q53GG5	364 aa	Predicted RBP	11.37	□□□□□ -0.59
BRCA1-223	ENST00000494123	TCTEX1D4	Q5JR98	221 aa		11.37	□□□□□ -0.59

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