RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 COQ5Q5HYK3 327 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 OGFRL1Q5TC84 451 aaPredicted RBP0.75□□□□□ -2.29
SCN1A-206ENST00000491429 DCXRQ7Z4W1 244 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 DHFR2Q86XF0 187 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 C10orf67Q8IYJ2 551 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 DEFB125Q8N687 156 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 OR51D1Q8NGF3 324 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 ROPN1LQ96C74 230 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 REG4Q9BYZ8 158 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 IL36BQ9NZH7 164 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 ATP6V1DQ9Y5K8 247 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 LHFPL6Q9Y693 200 aa0.75□□□□□ -2.29
SCN1A-206ENST00000491429 TONSLQ96HA7 1378 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 CPAMD8Q8IZJ3 1885 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 IGKV2D-26A0A0A0MRZ7 120 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 LRRN3E7EW58 273 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 INMT-MINDY4F8WBC2 141 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 CETN3O15182 167 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 SLC16A4O15374 487 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 UCHL3P15374 230 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 MYL12AP19105 171 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 MARCKSL1P49006 195 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 TCL1AP56279 114 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 NAA20P61599 178 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 CAV1Q03135 178 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 ZNF345Q14585 488 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 GLT8D1Q68CQ7 371 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 ZNF439Q8NDP4 499 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 OR2T4Q8NH00 348 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 CNBD2Q96M20 576 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 OR51I1Q9H343 314 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 EFCAB1Q9HAE3 211 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 CISHQ9NSE2 258 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 USE1Q9NZ43 259 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 PTPRBP23467 1997 aa0.74□□□□□ -2.29
SCN1A-206ENST00000491429 TTC21AQ8NDW8 1320 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 TRBV20OR9-2A0A075B6H5 130 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 TRAV14DV4A0A0A6YYC5 116 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 A0A0J9YY10 115 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 A0A1B0GX78 115 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 IRGMA1A4Y4 181 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 PRM2P04554 102 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 METTL15P1P0C7V9 234 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 FGF6P10767 208 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 RPS4Y1P22090 263 aaKnown RBP0.73□□□□□ -2.29
SCN1A-206ENST00000491429 NFYAP23511 347 aaPredicted RBP0.73□□□□□ -2.29
SCN1A-206ENST00000491429 FXYD2P54710 66 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 CTAG1AP78358 180 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 KISS1Q15726 138 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 GRK1Q15835 563 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 GUK1Q16774 197 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 WFDC11Q8NEX6 87 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 KLK6Q92876 244 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 ODF3Q96PU9 254 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 SERPINI1Q99574 410 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 YIPF3Q9GZM5 350 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 XPNPEP1Q9NQW7 623 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 NKIRAS1Q9NYS0 192 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 MALRD1Q5VYJ5 2156 aa0.73□□□□□ -2.29
SCN1A-206ENST00000491429 PIK3R4Q99570 1358 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 FABP5P3A8MUU1 101 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 HCRTO43612 131 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 C1QAP02745 245 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 C10orf55Q5SWW7 151 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 SFXN4Q6P4A7 337 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 AAED1Q7RTV5 226 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 SNURFQ9Y675 71 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 COL6A6A6NMZ7 2263 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 RTTNQ86VV8 2226 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 PTPRSQ13332 1948 aa0.72□□□□□ -2.29
SCN1A-206ENST00000491429 BAZ2BQ9UIF8 2168 aaKnown RBP0.72□□□□□ -2.29
SCN1A-206ENST00000491429 SMARCA4P51532 1647 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 GLI3P10071 1580 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 ACOX3O15254 700 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 AP2S1P53680 142 aaPredicted RBP0.71□□□□□ -2.3
SCN1A-206ENST00000491429 COTL1Q14019 142 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 ZNF846Q147U1 533 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 CDK10Q15131 360 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 IBA57Q5T440 356 aaKnown RBP0.71□□□□□ -2.3
SCN1A-206ENST00000491429 HIST2H3PS2Q5TEC6 136 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 AADACL3Q5VUY0 350 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 SYPL2Q5VXT5 272 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 CD200R1LQ6Q8B3 271 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 LCN15Q6UWW0 184 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 BPIFA4PQ86YQ2 179 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 ZNF565Q8N9K5 539 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 GPR32P1Q8NGA4 272 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 DDI1Q8WTU0 396 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 C11orf40Q8WZ69 217 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 TMEM106AQ96A25 262 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 WDR61Q9GZS3 305 aaKnown RBP0.71□□□□□ -2.3
SCN1A-206ENST00000491429 CMTM6Q9NX76 183 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 C22orf24Q9Y442 160 aa0.71□□□□□ -2.3
SCN1A-206ENST00000491429 MYH11P35749 1972 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 FREM1Q5H8C1 2179 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 A0A1B0GV50 99 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 TNNC2P02585 160 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 CLPSP04118 112 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 ISG15P05161 165 aa0.7□□□□□ -2.3
SCN1A-206ENST00000491429 KRT7P08729 469 aa0.7□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms