RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 SRRM4A7MD48 611 aaKnown RBP6.84□□□□□ -1.31
USP4-213ENST00000488520 S1PR2O95136 353 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 NDUFA3O95167 84 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 SFT2D2O95562 160 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 DUS4LO95620 317 aaKnown RBP6.84□□□□□ -1.31
USP4-213ENST00000488520 IFNA21P01568 189 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 OR4E1P0C645 316 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 VDAC1P21796 283 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 G6PCP35575 357 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 EGFEM1PQ0D2K5 195 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 FXYD3Q14802 87 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 TNXAQ16473 311 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 TMEM268Q5VZI3 342 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 VKORC1L1Q8N0U8 176 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 UXS1Q8NBZ7 420 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 DUSP18Q8NEJ0 188 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 OR4X2Q8NGF9 303 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 CHPT1Q8WUD6 406 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 MRGPRFQ96AM1 343 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 GALNT14Q96FL9 552 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 TP53RKQ96S44 253 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 KRTAP4-9Q9BYQ8 210 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 COMMD5Q9GZQ3 224 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 TMEM222Q9H0R3 208 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 ALX4Q9H161 411 aaPredicted RBP6.84□□□□□ -1.31
USP4-213ENST00000488520 C20orf85Q9H1P6 137 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 NUDT15Q9NV35 164 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 CACFD1Q9UGQ2 172 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 TBC1D24Q9ULP9 559 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 FLVCR2Q9UPI3 526 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 U3KQK5 164 aa6.84□□□□□ -1.31
USP4-213ENST00000488520 DYNC2H1Q8NCM8 4307 aaKnown RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 MARCH11A6NNE9 402 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 INMT-MINDY4F8WBC2 141 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 AP4M1O00189 453 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 KBTBD11O94819 623 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 CDS2O95674 445 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 CA2P00918 260 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 IGHG2P01859 326 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 HLA-AP01891 365 aaKnown RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 HLA-DRB1P01911 266 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 SAA1P0DJI8 122 aaPredicted RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 ANXA7P20073 488 aaKnown RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 UCP1P25874 307 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 BRWD1-AS2P59051 145 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 RPL8P62917 257 aaKnown RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 IFITM3Q01628 133 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 PRSS8Q16651 343 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 RGS21Q2M5E4 152 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 ZNF585BQ52M93 769 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 OR4A47Q6IF82 309 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 TMEM65Q6PI78 240 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 NRARPQ7Z6K4 114 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 FAM219AQ8IW50 185 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 SELENOHQ8IZQ5 122 aaKnown RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 FAM71E2Q8N5Q1 922 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 TMEM167AQ8TBQ9 72 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 GLYATL2Q8WU03 294 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 RBPMSQ93062 196 aaKnown RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 IL22RA2Q969J5 263 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 RBMXL1Q96E39 390 aaKnown RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 TMEM68Q96MH6 324 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 ASCL2Q99929 193 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 CDIP1Q9H305 208 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 OR51J1Q9H342 316 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 PARP11Q9NR21 331 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 TMEM140Q9NV12 185 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 GAR1Q9NY12 217 aaKnown RBP6.83□□□□□ -1.32
USP4-213ENST00000488520 BET1LQ9NYM9 111 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 PRNDQ9UKY0 176 aa6.83□□□□□ -1.32
USP4-213ENST00000488520 STAB2Q8WWQ8 2551 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 C9orf170A2RU37 121 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 UPK2O00526 184 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 FCN1O00602 326 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 CYB5BO43169 146 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 PRAF2O60831 178 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 PTTG1O95997 202 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 IFNA17P01571 189 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 IGLV2-23P01705 113 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 BTCP35070 178 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 MECP2P51608 486 aaKnown RBP6.82□□□□□ -1.32
USP4-213ENST00000488520 CX3CL1P78423 397 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 PPP1R1AQ13522 171 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 TMEM187Q14656 261 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 POU2AF1Q16633 256 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 THOC7Q6I9Y2 204 aaKnown RBP6.82□□□□□ -1.32
USP4-213ENST00000488520 C18orf65Q6ZTR6 163 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 LYG2Q86SG7 212 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 PUSL1Q8N0Z8 303 aaKnown RBP6.82□□□□□ -1.32
USP4-213ENST00000488520 CADM3Q8N126 398 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 GRPEL2Q8TAA5 225 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 ARPC1AQ92747 370 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 TMEM230Q96A57 120 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 TMEM56Q96MV1 263 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 FYTTD1Q96QD9 318 aaKnown RBP6.82□□□□□ -1.32
USP4-213ENST00000488520 SPIN2AQ99865 258 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 SPIN2BQ9BPZ2 258 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 HINT2Q9BX68 163 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 ENY2Q9NPA8 101 aa6.82□□□□□ -1.32
USP4-213ENST00000488520 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms