RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 CDIPTO14735 213 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BKO60814 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 RBMXL2O75526 392 aaKnown RBP7.42□□□□□ -1.22
COL12A1-208ENST00000486533 MT-CO2P00403 227 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 IGHV2-70P01814 119 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BJP06899 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 CXCL1P09341 107 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BOP23527 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 GCH1P30793 250 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BBP33778 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 GPR6P46095 362 aaPredicted RBP7.42□□□□□ -1.22
COL12A1-208ENST00000486533 OR3A1P47881 315 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 ELLP55199 621 aaPredicted RBP7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BDP58876 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 ERVFRD-1P60508 538 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BCP62807 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 GNB2P62879 340 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 RPL19P84098 196 aaKnown RBP7.42□□□□□ -1.22
COL12A1-208ENST00000486533 ADIRFQ15847 76 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST2H2BEQ16778 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 VWC2Q2TAL6 325 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 ZNF718Q3SXZ3 478 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 FFAR4Q5NUL3 377 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.42□□□□□ -1.22
COL12A1-208ENST00000486533 XP32Q5T750 250 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 LINC01356Q8N9X3 169 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 OR5R1Q8NH85 324 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 SLC25A40Q8TBP6 338 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 RAB1CQ92928 201 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BHQ93079 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BNQ99877 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 HIST1H2BMQ99879 126 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 OR2J1Q9GZK6 312 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 URGCP-MRPS24S4R325 110 aa7.42□□□□□ -1.22
COL12A1-208ENST00000486533 LINC00587B1AMM8 73 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 RBFOX2O43251 390 aaKnown RBP eCLIP7.41□□□□□ -1.22
COL12A1-208ENST00000486533 TIMM8AO60220 97 aaPredicted RBP7.41□□□□□ -1.22
COL12A1-208ENST00000486533 HRASP01112 189 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 IGLV2-14P01704 120 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 P0C879 139 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 KITLGP21583 273 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 COL8A2P25067 703 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 CDC34P49427 236 aaPredicted RBP7.41□□□□□ -1.22
COL12A1-208ENST00000486533 CCL8P80075 99 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 DEFA6Q01524 100 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 SSX2Q16385 188 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 CR1LQ2VPA4 569 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 TMEM30BQ3MIR4 351 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 SPATA46Q5T0L3 261 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 Q6ZRM9 215 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 HIST3H2BBQ8N257 126 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 OR52E5Q8NH55 327 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 IMMP2LQ96T52 175 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 GPHA2Q96T91 129 aa7.41□□□□□ -1.22
COL12A1-208ENST00000486533 ODAMA1E959 279 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 C17orf100A8MU93 164 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 C12orf77C9JDV5 145 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 DVL1O14640 695 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 YIF1AO95070 293 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 HPRT1P00492 218 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 HBZP02008 142 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 TRGC2P03986 189 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 GRPP07492 148 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 TRGC1P0CF51 173 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 GZMHP20718 246 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 GALR1P47211 349 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 GABRA2P47869 451 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 RAB7AP51149 207 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 PKIAP61925 76 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 LCN2P80188 198 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 WDR25Q64LD2 544 aaPredicted RBP7.4□□□□□ -1.22
COL12A1-208ENST00000486533 ZNF343Q6P1L6 599 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 ACP7Q6ZNF0 438 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 HAPLN4Q86UW8 402 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 TMEM183AQ8IXX5 376 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 CORO2AQ92828 525 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 DIRC2Q96SL1 478 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 PYGO2Q9BRQ0 406 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 NCOR1P1Q9H4R4 102 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 LPAR2Q9HBW0 351 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 JPT1Q9UK76 154 aa7.4□□□□□ -1.22
COL12A1-208ENST00000486533 IGLV3-9A0A075B6K5 115 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 TRAV20A0A0B4J274 112 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 A0A1W2PPV4 95 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 B4DSR2 109 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 ITGB1BP1O14713 200 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 KRASP01116 189 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 HIST1H1BP16401 226 aaKnown RBP7.39□□□□□ -1.23
COL12A1-208ENST00000486533 GPR12P47775 334 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 FGF8P55075 233 aaPredicted RBP7.39□□□□□ -1.23
COL12A1-208ENST00000486533 SPCS3P61009 180 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 MRPS11P82912 194 aaKnown RBP7.39□□□□□ -1.23
COL12A1-208ENST00000486533 SRSF2Q01130 221 aaKnown RBP7.39□□□□□ -1.23
COL12A1-208ENST00000486533 ARL16Q0P5N6 197 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 ZNF816Q0VGE8 651 aaPredicted RBP7.39□□□□□ -1.23
COL12A1-208ENST00000486533 PSG7Q13046 419 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 EIF4EBP1Q13541 118 aaPredicted RBP7.39□□□□□ -1.23
COL12A1-208ENST00000486533 RAB31Q13636 194 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 ZNF726P1Q15940 193 aa7.39□□□□□ -1.23
COL12A1-208ENST00000486533 LBHQ53QV2 105 aaPredicted RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms