RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 PLEKHA3Q9HB20 300 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 RANGRFQ9HD47 186 aaPredicted RBP6.29□□□□□ -1.4
USP40-216ENST00000485943 ZNF257Q9Y2Q1 563 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 NUBP2Q9Y5Y2 271 aa6.29□□□□□ -1.4
USP40-216ENST00000485943 ANKRD20A5PA0PJZ0 165 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 NAP1L6A6NFF2 107 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 HMX3A6NHT5 357 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 SRRM4A7MD48 611 aaKnown RBP6.28□□□□□ -1.4
USP40-216ENST00000485943 H0Y980 276 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 CD74P04233 296 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 FGF2P09038 288 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 LGALS1P09382 135 aaKnown RBP6.28□□□□□ -1.4
USP40-216ENST00000485943 TRAPPC2P0DI81 140 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 TRAPPC2BP0DI82 140 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 PSMB8P28062 276 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 SUB1P53999 127 aaKnown RBP eCLIP6.28□□□□□ -1.4
USP40-216ENST00000485943 OR2B8PP59922 312 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 RND3P61587 244 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 RHOGP84095 191 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 NDPQ00604 133 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 DEFA6Q01524 100 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 ZNF45Q02386 682 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 C10orf55Q5SWW7 151 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 C9orf66Q5T8R8 295 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 OR4D10Q8NGI6 311 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 OR1L6Q8NGR2 347 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 DEDD2Q8WXF8 326 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 LSM10Q969L4 123 aaKnown RBP6.28□□□□□ -1.4
USP40-216ENST00000485943 MRGPRFQ96AM1 343 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 EEF1AKMT3Q96AZ1 226 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 C16orf92Q96LL3 132 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 NXF2Q9GZY0 626 aaKnown RBP6.28□□□□□ -1.4
USP40-216ENST00000485943 PALMDQ9NP74 551 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 BATF3Q9NR55 127 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 FAM212BQ9NTI7 297 aaPredicted RBP6.28□□□□□ -1.4
USP40-216ENST00000485943 CACFD1Q9UGQ2 172 aa6.28□□□□□ -1.4
USP40-216ENST00000485943 CEBPZOSA8MTT3 80 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 SEC14L6B5MCN3 397 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 UPK2O00526 184 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 OVOL1O14753 267 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 SAP30O75446 220 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 OR2J3O76001 311 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 IGLV2-14P01704 120 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 HSPB1P04792 205 aaKnown RBP6.27□□□□□ -1.41
USP40-216ENST00000485943 REG1AP05451 166 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 OR5AC1P0C628 307 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 OR13C7P0DN81 318 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 IGLL1P15814 213 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 EXOSC2Q13868 293 aaKnown RBP6.27□□□□□ -1.41
USP40-216ENST00000485943 RBMS2Q15434 407 aaKnown RBP6.27□□□□□ -1.41
USP40-216ENST00000485943 SP6Q3SY56 376 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 MZT2BQ6NZ67 158 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 PUSL1Q8N0Z8 303 aaKnown RBP6.27□□□□□ -1.41
USP40-216ENST00000485943 CENPSQ8N2Z9 138 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 ZNF491Q8N8L2 437 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 UBAC2Q8NBM4 344 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 MINDY2Q8NBR6 621 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 NECAP1Q8NC96 275 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 OR6Q1Q8NGQ2 317 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 OR5B3Q8NH48 314 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 DYNLRB2Q8TF09 96 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 RBPMSQ93062 196 aaKnown RBP6.27□□□□□ -1.41
USP40-216ENST00000485943 CXorf58Q96LI9 332 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 P2RX4Q99571 388 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 SLC25A21Q9BQT8 299 aaPredicted RBP6.27□□□□□ -1.41
USP40-216ENST00000485943 RBM38Q9H0Z9 239 aaKnown RBP6.27□□□□□ -1.41
USP40-216ENST00000485943 KLK15Q9H2R5 256 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 NAA60Q9H7X0 242 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 PEMTQ9UBM1 199 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 NSG2Q9Y328 171 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 FBXO7Q9Y3I1 522 aa6.27□□□□□ -1.41
USP40-216ENST00000485943 WRBO00258 174 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 PRH1P02810 166 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 CRYGBP07316 175 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 PSMB6P28072 239 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 PPIFP30405 207 aaKnown RBP6.26□□□□□ -1.41
USP40-216ENST00000485943 CRIP2P52943 208 aaPredicted RBP6.26□□□□□ -1.41
USP40-216ENST00000485943 C15orf32Q32M92 178 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 C4orf46Q504U0 113 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 Q56UQ5 140 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 DEFB121Q5J5C9 76 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 TCTEX1D4Q5JR98 221 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 TMEM268Q5VZI3 342 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 C18orf65Q6ZTR6 163 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 FAM219AQ8IW50 185 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 LGI3Q8N145 548 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 TTC9CQ8N5M4 171 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 OR1S1Q8NH92 325 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 PINX1Q96BK5 328 aaKnown RBP6.26□□□□□ -1.41
USP40-216ENST00000485943 RAX2Q96IS3 184 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 SRSF8Q9BRL6 282 aaKnown RBP6.26□□□□□ -1.41
USP40-216ENST00000485943 WDR12Q9GZL7 423 aaKnown RBP6.26□□□□□ -1.41
USP40-216ENST00000485943 HIPK2Q9H2X6 1198 aa6.26□□□□□ -1.41
USP40-216ENST00000485943 PEF1Q9UBV8 284 aaKnown RBP6.26□□□□□ -1.41
USP40-216ENST00000485943 PAIP2BQ9ULR5 123 aaKnown RBP6.26□□□□□ -1.41
USP40-216ENST00000485943 ZNF320A2RRD8 509 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 C15orf61A6NNL5 157 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 NPIPB5A8MRT5 1133 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 G3V4G9 280 aa6.25□□□□□ -1.41
USP40-216ENST00000485943 SCGB1D2O95969 90 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms