RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 OR11H12B2RN74 326 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 C16orf97H3BN30 126 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 J3QR06 171 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 SERF2P84101 59 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 TCF23Q7RTU1 214 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 OR11H1Q8NG94 326 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 OR11H2Q8NH07 326 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 JMJD8Q96S16 334 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 SIGMAR1Q99720 223 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 SELENOKQ9Y6D0 94 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 ANK3Q12955 4377 aaKnown RBP6.36□□□□□ -1.39
USP4-211ENST00000485450 A4D1N5 150 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 PHF1O43189 567 aaPredicted RBP6.36□□□□□ -1.39
USP4-211ENST00000485450 NRASP01111 189 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 KRASP01116 189 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 ZNF20P17024 532 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 CCNOP22674 350 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 ID3Q02535 119 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 FOXE3Q13461 319 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 PHLDA2Q53GA4 152 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 SPXQ9BT56 116 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 GEMIN7Q9H840 131 aaKnown RBP6.36□□□□□ -1.39
USP4-211ENST00000485450 ZNF286AQ9HBT8 521 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 NRN1Q9NPD7 142 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 NECAP2Q9NVZ3 263 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 ZNF407Q9C0G0 2248 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 ALPK2Q86TB3 2170 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 IGLV3-9A0A075B6K5 115 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 SAA2-SAA4A0A096LPE2 208 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 IGHV3-15A0A0B4J1V0 119 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 IGKV1D-43A0A0B4J1Z2 117 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 IGHG1P01857 330 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 PSMB3P49720 205 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 FMODQ06828 376 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 CXorf66Q5JRM2 361 aaPredicted RBP6.36□□□□□ -1.39
USP4-211ENST00000485450 SPIN3Q5JUX0 258 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 ASCL4Q6XD76 172 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 BAGE3Q86Y29 109 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 BAGE2Q86Y30 109 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 C19orf24Q9BVV8 132 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 SSBP4Q9BWG4 385 aaPredicted RBP6.36□□□□□ -1.39
USP4-211ENST00000485450 PBOV1Q9GZY1 135 aa6.36□□□□□ -1.39
USP4-211ENST00000485450 VPS13CQ709C8 3753 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 ZNF462Q96JM2 2506 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 A0A1W2PPR1 153 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 DPRXA6NFQ7 191 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 SLC33A1O00400 549 aaPredicted RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 SYNGR3O43761 229 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 TUSC2O75896 110 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 PAX9P55771 341 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 RSPO1Q2MKA7 263 aaPredicted RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 MBNL2Q5VZF2 373 aaKnown RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 RNF133Q8WVZ7 376 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 SPSB4Q96A44 273 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 CRIM1Q9NZV1 1036 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 ZNF469Q96JG9 3925 aaPredicted RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 MRPL33O75394 65 aaKnown RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 MT-CO2P00403 227 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 GATA2P23769 480 aaPredicted RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 ARF1P84077 181 aaKnown RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 RAB31Q13636 194 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 ZNF672Q499Z4 452 aaPredicted RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 AAED1Q7RTV5 226 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 OR4A5Q8NH83 315 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 NEU4Q8WWR8 484 aaPredicted RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 COA3Q9Y2R0 106 aaPredicted RBP6.35□□□□□ -1.39
USP4-211ENST00000485450 POLEQ07864 2286 aa6.35□□□□□ -1.39
USP4-211ENST00000485450 TRAV9-1A0A075B6T8 112 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 A0A096LNT2 108 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 IGHV1-18A0A0C4DH31 117 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 TMPRSS2O15393 492 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 RBMXL2O75526 392 aaKnown RBP6.34□□□□□ -1.39
USP4-211ENST00000485450 ZNF823P16415 610 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 BVES-AS1Q5T3Y7 98 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 FAM57BQ71RH2 274 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 SCGB1C1Q8TD33 95 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 LHX4Q969G2 390 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 FAM103A1Q9BTL3 118 aaKnown RBP6.34□□□□□ -1.39
USP4-211ENST00000485450 TMEM222Q9H0R3 208 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 MRPL18Q9H0U6 180 aaKnown RBP6.34□□□□□ -1.39
USP4-211ENST00000485450 OR51B2Q9Y5P1 312 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 C11orf98E9PRG8 122 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 DHHO43323 396 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 CHST1O43916 411 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 CLEC3BP05452 202 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 FOXG1P55316 489 aaPredicted RBP6.34□□□□□ -1.39
USP4-211ENST00000485450 SSBP2P81877 361 aaPredicted RBP6.34□□□□□ -1.39
USP4-211ENST00000485450 PMCHL1Q16048 86 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 MPV17L2Q567V2 206 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 PET117Q6UWS5 81 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 SGMS2Q8NHU3 365 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 OR5P3Q8WZ94 311 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 BEX4Q9NWD9 120 aaPredicted RBP6.34□□□□□ -1.39
USP4-211ENST00000485450 C3orf85A0A1B0GTC6 90 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 FXYD4P59646 89 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 RPL32P62910 135 aaKnown RBP6.34□□□□□ -1.39
USP4-211ENST00000485450 SRYQ05066 204 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 C20orf204Q6ZNR8 217 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 ZNF611Q8N823 705 aa6.34□□□□□ -1.39
USP4-211ENST00000485450 OR4F5Q8NH21 305 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms