RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 AMMECR1Q9Y4X0 333 aaPredicted RBP11.37□□□□□ -0.59
USP42-206ENST00000479544 LILRA1O75019 489 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 TNFSF13O75888 250 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 ZNF726P1Q15940 193 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 FAM201AQ5SY85 155 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 ZBTB34Q8NCN2 500 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 PRDM14Q9GZV8 571 aa11.37□□□□□ -0.59
USP42-206ENST00000479544 A0A1B0GW64 132 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 CFPP27918 469 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 RPL8P62917 257 aaKnown RBP11.36□□□□□ -0.59
USP42-206ENST00000479544 HOXA4Q00056 320 aaPredicted RBP11.36□□□□□ -0.59
USP42-206ENST00000479544 RIPPLY2Q5TAB7 128 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 ASPHD1Q5U4P2 390 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 DHRS13Q6UX07 377 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 OR2M7Q8NG81 312 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 REG1AP05451 166 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 TCF15Q12870 199 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 C10orf113Q5VZT2 155 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 SPATA31B1PQ5VZV4 182 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 FBXW9Q5XUX1 488 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 ZNF324BQ6AW86 544 aaPredicted RBP11.36□□□□□ -0.59
USP42-206ENST00000479544 MOB3BQ86TA1 216 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 WFDC8Q8IUA0 241 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 OR5P3Q8WZ94 311 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 CCL17Q92583 94 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 CXXC4Q9H2H0 198 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 PLXNB3Q9ULL4 1909 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 ISLRO14498 428 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 TNFSF15O95150 251 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 HIST1H1EP10412 219 aaKnown RBP11.36□□□□□ -0.59
USP42-206ENST00000479544 RND2P52198 227 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 BPTFQ12830 3046 aa11.36□□□□□ -0.59
USP42-206ENST00000479544 OR4C46A6NHA9 309 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 RPL30P62888 115 aaKnown RBP11.35□□□□□ -0.59
USP42-206ENST00000479544 PRNTQ86SH4 94 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 MKI67P46013 3256 aaKnown RBP11.35□□□□□ -0.59
USP42-206ENST00000479544 IGKV1D-33P01593 117 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 IGKV1-33P01594 117 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 PAX9P55771 341 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 GMPPAQ96IJ6 420 aaPredicted RBP11.35□□□□□ -0.59
USP42-206ENST00000479544 CRIM1Q9NZV1 1036 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 IGKV1-6A0A0C4DH72 117 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 MPDU1O75352 247 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 CA2P00918 260 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 CELA3BP08861 270 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 CRYGSP22914 178 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 CTSSP25774 331 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 TDRG1Q3Y452 100 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 COX19Q49B96 90 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 OR13A1Q8NGR1 328 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 TRAV1-1A0A0B4J248 108 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 hADV38S2A0JD32 116 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 NKX6-3A6NJ46 265 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 AMY1AP04745 511 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 UCP2P55851 309 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 PROCRQ9UNN8 238 aa11.35□□□□□ -0.59
USP42-206ENST00000479544 DNPH1O43598 174 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 COX6A1P12074 109 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 RIPPLY3P57055 190 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 Q5PR19 223 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 WDR54Q9H977 334 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 FAM157AC9JC47 383 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 CSN1S1P47710 185 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 LHX2P50458 406 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 TMEM177Q53S58 311 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 WFDC3Q8IUB2 231 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 PPIAL4DF5H284 164 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 J3QR89 54 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 MPV17P39210 176 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 SSPNQ14714 243 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 ASCL5Q7RTU5 278 aa11.34□□□□□ -0.59
USP42-206ENST00000479544 TNXAQ16473 311 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 ZNF766Q5HY98 468 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 ACTL10Q5JWF8 245 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 TMEM45BQ96B21 275 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 TTTY12Q9BZ98 90 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 TECTAO75443 2155 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 COL4A3Q01955 1670 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 ADH4P08319 380 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 SFTPCP11686 197 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 FAM222BQ8WU58 562 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 SEPSECSQ9HD40 501 aaKnown RBP11.33□□□□□ -0.6
USP42-206ENST00000479544 YLPM1P49750 1951 aaKnown RBP11.33□□□□□ -0.6
USP42-206ENST00000479544 HTTP42858 3142 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 MKRN2OSH3BPM6 223 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 RBFOX2O43251 390 aaKnown RBP eCLIP11.33□□□□□ -0.6
USP42-206ENST00000479544 SP9P0CG40 484 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 BTF3P20290 206 aaKnown RBP11.33□□□□□ -0.6
USP42-206ENST00000479544 FBLN7Q53RD9 439 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 ZNF114Q8NC26 417 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 CCL13Q99616 98 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 ELOVL5Q9NYP7 299 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 HILPDAQ9Y5L2 63 aa11.33□□□□□ -0.6
USP42-206ENST00000479544 M0QZ24 198 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 CORTO00230 105 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 HSPE1P61604 102 aaKnown RBP11.32□□□□□ -0.6
USP42-206ENST00000479544 RSPO1Q2MKA7 263 aaPredicted RBP11.32□□□□□ -0.6
USP42-206ENST00000479544 PEAR1Q5VY43 1037 aaPredicted RBP11.32□□□□□ -0.6
USP42-206ENST00000479544 LINC00596Q86U02 117 aa11.32□□□□□ -0.6
USP42-206ENST00000479544 KLF14Q8TD94 323 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms