RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 SPATA2Q9UM82 520 aa12.56□□□□□ -0.4
VIM-204ENST00000478746 K7EMT4 169 aa12.55□□□□□ -0.4
VIM-204ENST00000478746 NDUFA4O00483 81 aa12.55□□□□□ -0.4
VIM-204ENST00000478746 ZNF207O43670 478 aaKnown RBP12.55□□□□□ -0.4
VIM-204ENST00000478746 IGLV2-14P01704 120 aa12.55□□□□□ -0.4
VIM-204ENST00000478746 HIST1H1DP16402 221 aaKnown RBP12.55□□□□□ -0.4
VIM-204ENST00000478746 NFYAP23511 347 aaPredicted RBP12.55□□□□□ -0.4
VIM-204ENST00000478746 BRWD1-AS2P59051 145 aa12.55□□□□□ -0.4
VIM-204ENST00000478746 NR2C2APQ86WQ0 139 aa12.55□□□□□ -0.4
VIM-204ENST00000478746 MFSD4AQ8N468 514 aa12.55□□□□□ -0.4
VIM-204ENST00000478746 VN1R17PQ8TDU5 208 aa12.55□□□□□ -0.4
VIM-204ENST00000478746 IGHV3OR16-8A0A075B7F1 116 aa12.54□□□□□ -0.4
VIM-204ENST00000478746 CTXN2P0C2S0 81 aa12.54□□□□□ -0.4
VIM-204ENST00000478746 OR2B8PP59922 312 aa12.54□□□□□ -0.4
VIM-204ENST00000478746 TMEM187Q14656 261 aa12.54□□□□□ -0.4
VIM-204ENST00000478746 BSCL2Q96G97 398 aaPredicted RBP12.54□□□□□ -0.4
VIM-204ENST00000478746 AIFM2Q9BRQ8 373 aa12.54□□□□□ -0.4
VIM-204ENST00000478746 KRTAP4-5Q9BYR2 181 aa12.54□□□□□ -0.4
VIM-204ENST00000478746 HRASLSQ9HDD0 168 aa12.54□□□□□ -0.4
VIM-204ENST00000478746 DNAH11Q96DT5 4516 aa12.54□□□□□ -0.4
VIM-204ENST00000478746 IGKV1D-13A0A0B4J2D9 117 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 IGLC7A0M8Q6 106 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 CYB5BO43169 146 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 CA1P00915 261 aaPredicted RBP12.53□□□□□ -0.4
VIM-204ENST00000478746 IGKV1-13P0DP09 117 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 TFPI2P48307 235 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 FABP5Q01469 135 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 SPSB3Q6PJ21 355 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 RNF2Q99496 336 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 MRPS26Q9BYN8 205 aaKnown RBP12.53□□□□□ -0.4
VIM-204ENST00000478746 HRH4Q9H3N8 390 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 BET1LQ9NYM9 111 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 TAS2R8Q9NYW2 309 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 SMPXQ9UHP9 88 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 ETV7Q9Y603 341 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 PKD1P98161 4303 aa12.53□□□□□ -0.4
VIM-204ENST00000478746 METTL21EPA6NDL7 271 aa12.52□□□□□ -0.41
VIM-204ENST00000478746 SMIM18P0DKX4 95 aa12.52□□□□□ -0.41
VIM-204ENST00000478746 RAB6AP20340 208 aa12.52□□□□□ -0.41
VIM-204ENST00000478746 EIF4EBP1Q13541 118 aaPredicted RBP12.52□□□□□ -0.41
VIM-204ENST00000478746 SLC25A24Q6NUK1 477 aa12.52□□□□□ -0.41
VIM-204ENST00000478746 ZNF66Q6ZN08 573 aa12.52□□□□□ -0.41
VIM-204ENST00000478746 SRSF8Q9BRL6 282 aaKnown RBP12.52□□□□□ -0.41
VIM-204ENST00000478746 CHRDL1Q9BU40 450 aa12.52□□□□□ -0.41
VIM-204ENST00000478746 IGKV3-7A0A075B6H7 116 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 IGHV4-4A0A075B6R2 117 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 C15orf62A8K5M9 175 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 PDCD5O14737 125 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 RTL8CO15255 209 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 DTYMKP23919 212 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 ARL6IP1Q15041 203 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 TIMM50Q3ZCQ8 353 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 GPHA2Q96T91 129 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 COMMD5Q9GZQ3 224 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 NDUFB11Q9NX14 153 aa12.51□□□□□ -0.41
VIM-204ENST00000478746 ELF5Q9UKW6 265 aaPredicted RBP12.51□□□□□ -0.41
VIM-204ENST00000478746 TRAV10A0A0B4J240 114 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 IFITM5A6NNB3 132 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 CHEK1O14757 476 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 HLA-DMBP28068 263 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 OR10A3P58181 314 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 CENPSQ8N2Z9 138 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 OR10W1Q8NGF6 305 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 CMTM3Q96MX0 182 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 RHPN1-AS1Q9BWJ2 59 aa12.5□□□□□ -0.41
VIM-204ENST00000478746 IGHV3-21A0A0B4J1V1 117 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 TRAV3A0A0B4J244 114 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 M0R2N4 97 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 UPK2O00526 184 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 CDNFQ49AH0 187 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 PVRIGQ6DKI7 326 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 CNIH2Q6PI25 160 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 GBGT1Q8N5D6 347 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 POM121L12Q8N7R1 296 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 GDPD1Q8N9F7 314 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 Q8NAQ8 132 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 UBAC2Q8NBM4 344 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 TMEM116Q8NCL8 245 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 ATP6V0BQ99437 205 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 QTRT1Q9BXR0 403 aaKnown RBP12.49□□□□□ -0.41
VIM-204ENST00000478746 ATG5Q9H1Y0 275 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 C21orf62Q9NYP8 219 aa12.49□□□□□ -0.41
VIM-204ENST00000478746 TRAV1-2A0A0B4J238 106 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 IGHV7-4-1A0A0J9YVY3 117 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 C15orf61A6NNL5 157 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 SERPINE2P07093 398 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 RBMY1A1P0DJD3 496 aaKnown RBP12.48□□□□□ -0.41
VIM-204ENST00000478746 RBMY1CP0DJD4 496 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 OR13C7P0DN81 318 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 PAFAH1B2P68402 229 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 RBMY1FQ15415 496 aaKnown RBP12.48□□□□□ -0.41
VIM-204ENST00000478746 Q6ZTC4 211 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 SPAG16Q8N0X2 631 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 SCARB1Q8WTV0 552 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 RNF126Q9BV68 326 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 DCSTAMPQ9H295 470 aa12.48□□□□□ -0.41
VIM-204ENST00000478746 IGHV3-49A0A0A0MS15 119 aa12.47□□□□□ -0.41
VIM-204ENST00000478746 IGHV4-28A0A0C4DH34 117 aa12.47□□□□□ -0.41
VIM-204ENST00000478746 TNFSF12O43508 249 aa12.47□□□□□ -0.41
VIM-204ENST00000478746 TRAPPC2P0DI81 140 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms