RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 OR4X1Q8NH49 305 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 OR13C6PQ8NH95 151 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 DOK4Q8TEW6 326 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 ASB13Q8WXK3 278 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 TMEM203Q969S6 136 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 GALMQ96C23 342 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 DDIT4LQ96D03 193 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 PGLYRP3Q96LB9 341 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 OR52B2Q96RD2 323 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 SERPINI1Q99574 410 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 CMSS1Q9BQ75 279 aaKnown RBP1.13□□□□□ -2.23
VPS50-213ENST00000477572 RNASE7Q9H1E1 156 aaKnown RBP1.13□□□□□ -2.23
VPS50-213ENST00000477572 FBXL15Q9H469 300 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 FAM96AQ9H5X1 160 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 ZNF286AQ9HBT8 521 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 SLC23A2Q9UGH3 650 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 GNG8Q9UK08 70 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 PKIGQ9Y2B9 76 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.13□□□□□ -2.23
VPS50-213ENST00000477572 SNX10Q9Y5X0 201 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 CDK5RAP2Q96SN8 1893 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 FAM135AQ9P2D6 1515 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 ZNF609O15014 1411 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 PIK3C2GO75747 1445 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 CR1P17927 2039 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 ATG2AQ2TAZ0 1938 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 PTPRJQ12913 1337 aa1.13□□□□□ -2.23
VPS50-213ENST00000477572 EIF4G3O43432 1585 aaKnown RBP1.13□□□□□ -2.23
VPS50-213ENST00000477572 PSME4Q14997 1843 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 UHRF1BP1LA0JNW5 1464 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 MAGI1Q96QZ7 1491 aaPredicted RBP1.12□□□□□ -2.23
VPS50-213ENST00000477572 SBF1O95248 1867 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 A0A087WX48 190 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 MEIKINA0A087WXM9 373 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 IGHV1-45A0A0A0MS14 117 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 FAM236DA0A1B0GTK5 79 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 A0A1W2PRE2 83 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 MAP1LC3B2A6NCE7 125 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 F5H5K5 113 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 F6UZH7 168 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 K7EQS6 105 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 SLC17A3O00476 420 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 FAAHO00519 579 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 LECT2O14960 151 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 CRXO43186 299 aaPredicted RBP1.12□□□□□ -2.23
VPS50-213ENST00000477572 ORC5O43913 435 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 GNG7O60262 68 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 BANF1O75531 89 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 STK16O75716 305 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 FAM107AO95990 144 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 OR12D1P0DN82 309 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 FAM236CP0DP71 79 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 CXCL2P19875 107 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 CXCL3P19876 107 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 DDTP30046 118 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 TSPOP30536 169 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 S100A11P31949 105 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 OR1E2P47887 323 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 RAB38P57729 211 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 OR8B8Q15620 311 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 HIST3H3Q16695 136 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 CCSMST1Q4G0I0 132 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 FAM162BQ5T6X4 162 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 HIST2H3PS2Q5TEC6 136 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 DCUN1D2Q6PH85 259 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 HAGHLQ6PII5 290 aaPredicted RBP1.12□□□□□ -2.23
VPS50-213ENST00000477572 FER1L6-AS1Q8NA97 138 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 ZNF439Q8NDP4 499 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 OR4D11Q8NGI4 311 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 OR2T4Q8NH00 348 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 SFT2D1Q8WV19 159 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 SKA2Q8WVK7 121 aaPredicted RBP1.12□□□□□ -2.23
VPS50-213ENST00000477572 C1orf54Q8WWF1 131 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 HIST1H2BAQ96A08 127 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 REEP6Q96HR9 211 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 DIRAS2Q96HU8 199 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 BTF3L4Q96K17 158 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 DNAJC30Q96LL9 226 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 CCDC115Q96NT0 180 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 EFCAB11Q9BUY7 163 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 MAP1LC3BQ9GZQ8 125 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 C14orf105Q9NVL8 296 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 MED29Q9NX70 200 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 CALML5Q9NZT1 146 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 DOK5Q9P104 306 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 COPZ2Q9P299 210 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 HSPB8Q9UJY1 196 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 LSM5Q9Y4Y9 91 aaKnown RBP1.12□□□□□ -2.23
VPS50-213ENST00000477572 PHLDA3Q9Y5J5 127 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 HSPE1-MOB4S4R3N1 261 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 BCL9O00512 1426 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 ATRNO75882 1429 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 CEP162Q5TB80 1403 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 MDC1Q14676 2089 aaKnown RBP1.12□□□□□ -2.23
VPS50-213ENST00000477572 THOC2Q8NI27 1593 aaKnown RBP1.12□□□□□ -2.23
VPS50-213ENST00000477572 MYH9P35579 1960 aaKnown RBP1.12□□□□□ -2.23
VPS50-213ENST00000477572 CHD1O14646 1710 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 KIAA1551Q9HCM1 1747 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 CCDC88AQ3V6T2 1871 aa1.12□□□□□ -2.23
VPS50-213ENST00000477572 NUP210Q8TEM1 1887 aaPredicted RBP1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms