RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 NRN1Q9NPD7 142 aa5.07□□□□□ -1.6
HERC4-209ENST00000473533 NCKAP5O14513 1909 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 RRHO14718 337 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 GDF9O60383 454 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 C8orf88P0DMB2 117 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 SSTR5P35346 364 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 MPV17P39210 176 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 PPOXP50336 477 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 OR5I1Q13606 314 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 FAM214BQ7L5A3 538 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 STXBP6Q8NFX7 210 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 TRIB1Q96RU8 372 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 NABP2Q9BQ15 211 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 TMEM14BQ9NUH8 114 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 ATMQ13315 3056 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 ZNF318Q5VUA4 2279 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 TRBV20OR9-2A0A075B6H5 130 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 SMIM27A0A1W2PRY6 76 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 DPRXA6NFQ7 191 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 IGKV3-15P01624 115 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 LINC00869P0C866 280 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 BMP5P22003 454 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 SUB1P53999 127 aaKnown RBP eCLIP5.06□□□□□ -1.65e-7■■■■■ 33
HERC4-209ENST00000473533 SELENOVP59797 346 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 C2orf83Q53S99 150 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 SPINK9Q5DT21 86 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 ARSJQ5FYB0 599 aaPredicted RBP5.06□□□□□ -1.6
HERC4-209ENST00000473533 GCSAMLQ5JQS6 135 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 OR1L8Q8NGR8 309 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 SSMEM1Q8WWF3 244 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 GNB4Q9HAV0 340 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 MSL2Q9HCI7 577 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 AURKAIP1Q9NWT8 199 aaPredicted RBP5.06□□□□□ -1.6
HERC4-209ENST00000473533 TRANK1O15050 2925 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 ICE1Q9Y2F5 2266 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 CFAP47Q6ZTR5 3102 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 IGHV3-43A0A0B4J1X8 118 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 SRRM5B3KS81 715 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 AQP7O14520 342 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 OR7C2O60412 319 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 HSBP1O75506 76 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 IGHV3-43DP0DP04 118 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 HIST1H1EP10412 219 aaKnown RBP5.06□□□□□ -1.6
HERC4-209ENST00000473533 PMCHP20382 165 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 IGHV1-2P23083 117 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 CHRNB4P30926 498 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 CEBPDP49716 269 aaPredicted RBP5.06□□□□□ -1.6
HERC4-209ENST00000473533 RPS16P62249 146 aaKnown RBP5.06□□□□□ -1.6
HERC4-209ENST00000473533 PRCDQ00LT1 54 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 EDDM3AQ14507 147 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 BATFQ16520 125 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 KRTCAP3Q53RY4 240 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 Q6ZN92 141 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 TMEM136Q6ZRR5 245 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 LINC00696Q6ZRV3 163 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 C11orf53Q8IXP5 236 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 GRAMD2BQ96HH9 432 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 CDX2Q99626 313 aaPredicted RBP5.06□□□□□ -1.6
HERC4-209ENST00000473533 OR51B2Q9Y5P1 312 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 ZDBF2Q9HCK1 2354 aa5.06□□□□□ -1.6
HERC4-209ENST00000473533 A0A1W2PN81 502 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 K7EN84 100 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 TM4SF5O14894 197 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 HNF1AP20823 631 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 USF1P22415 310 aaPredicted RBP5.05□□□□□ -1.6
HERC4-209ENST00000473533 ERHP84090 104 aaKnown RBP5.05□□□□□ -1.6
HERC4-209ENST00000473533 SPRY4Q9C004 299 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 GCM1Q9NP62 436 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 SERTAD4Q9NUC0 356 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 CALYQ9NYX4 217 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 LAMTOR2Q9Y2Q5 125 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 ESPL1Q14674 2120 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 ZFHX4Q86UP3 3567 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 CUL9Q8IWT3 2517 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 PGPEP1LA6NFU8 196 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 SLC17A3O00476 420 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 SIAH2O43255 324 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 CA2P00918 260 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 KLF3P57682 345 aaPredicted RBP5.05□□□□□ -1.6
HERC4-209ENST00000473533 ABHD12Q8N2K0 398 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 ZNF738Q8NE65 137 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 RFESDQ8TAC1 157 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 DDB2Q92466 427 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 ZNF714Q96N38 554 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 FAM103A1Q9BTL3 118 aaKnown RBP5.05□□□□□ -1.6
HERC4-209ENST00000473533 FAM234AQ9H0X4 552 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 FSCN3Q9NQT6 498 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 TP53TG3Q9ULZ0 132 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 BOD1L1Q8NFC6 3051 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 YLPM1P49750 1951 aaKnown RBP5.05□□□□□ -1.6
HERC4-209ENST00000473533 GPR179Q6PRD1 2367 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 DEFB108AA8MXU0 73 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 J3QR06 171 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 WNT9BO14905 357 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 NUPR1O60356 82 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 CGAP01215 116 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 APOA2P02652 100 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 CRYBB3P26998 211 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 SRIP30626 198 aa5.05□□□□□ -1.6
HERC4-209ENST00000473533 CA7P43166 264 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms