RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 MLXQ9UH92 298 aa12.26□□□□□ -0.45
COL9A3-208ENST00000469802 TEX50A0A1B0GTY4 177 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 GPR31O00270 319 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 APOA1P02647 267 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 PTBP1P26599 531 aaKnown RBP eCLIP12.25□□□□□ -0.45
COL9A3-208ENST00000469802 GPR183P32249 361 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 ERVK-16P61578 105 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 FAM106AQ4KMX7 169 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 UNQ9165/PRO28630Q6UXU0 137 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 HSD17B13Q7Z5P4 300 aaPredicted RBP12.25□□□□□ -0.45
COL9A3-208ENST00000469802 CMTM1Q8IZ96 169 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 FUNDC2Q9BWH2 189 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 HIPK2Q9H2X6 1198 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 NDUFA4L2Q9NRX3 87 aa12.25□□□□□ -0.45
COL9A3-208ENST00000469802 RBMY1BA6NDE4 496 aaKnown RBP12.24□□□□□ -0.45
COL9A3-208ENST00000469802 RBMY1EA6NEQ0 496 aaKnown RBP12.24□□□□□ -0.45
COL9A3-208ENST00000469802 CLEC3BP05452 202 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 SERPINE2P07093 398 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 RBMY1DP0C7P1 496 aaKnown RBP12.24□□□□□ -0.45
COL9A3-208ENST00000469802 TRAPPC2P0DI81 140 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 TRAPPC2BP0DI82 140 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 C8orf88P0DMB2 117 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 RPA2P15927 270 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 MFAP2P55001 183 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 GUCA2BQ16661 112 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 DEFB125Q8N687 156 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 OR1L8Q8NGR8 309 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 OR6F1Q8NGZ6 308 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 VN1R17PQ8TDU5 208 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 ZNF436Q9C0F3 470 aaPredicted RBP12.24□□□□□ -0.45
COL9A3-208ENST00000469802 SCPEP1Q9HB40 452 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 RETNQ9HD89 108 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 PALMDQ9NP74 551 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 FAM212BQ9NTI7 297 aaPredicted RBP12.24□□□□□ -0.45
COL9A3-208ENST00000469802 THYN1Q9P016 225 aa12.24□□□□□ -0.45
COL9A3-208ENST00000469802 ZNF320A2RRD8 509 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 OR11H12B2RN74 326 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 OR13C7P0DN81 318 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 HLA-DMAP28067 261 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 LPAR6P43657 344 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 VBP1P61758 197 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 ZNF57Q68EA5 555 aaPredicted RBP12.23□□□□□ -0.45
COL9A3-208ENST00000469802 UXS1Q8NBZ7 420 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 LSM10Q969L4 123 aaKnown RBP12.23□□□□□ -0.45
COL9A3-208ENST00000469802 MARC2Q969Z3 335 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 ATP6V0BQ99437 205 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 SRD5A3Q9H8P0 318 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 COMMD3Q9UBI1 195 aa12.23□□□□□ -0.45
COL9A3-208ENST00000469802 TGOLN2O43493 480 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 KRASP01116 189 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 IFNA6P05013 189 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 G6PCP35575 357 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 ELLP55199 621 aaPredicted RBP12.22□□□□□ -0.45
COL9A3-208ENST00000469802 TM4SF20Q53R12 229 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 ZFAND6Q6FIF0 208 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 BTNL8Q6UX41 500 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 TMEM190Q8WZ59 177 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 TMEM14BQ9NUH8 114 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 F11RQ9Y624 299 aaKnown RBP12.22□□□□□ -0.45
COL9A3-208ENST00000469802 SELENOKQ9Y6D0 94 aa12.22□□□□□ -0.45
COL9A3-208ENST00000469802 LCE6AA0A183 80 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 DBX1A6NMT0 343 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 C15orf61A6NNL5 157 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 F8W735 103 aaPredicted RBP12.21□□□□□ -0.45
COL9A3-208ENST00000469802 CYB5BO43169 146 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 ELK1P19419 428 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 RCVRNP35243 200 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 PHLDA2Q53GA4 152 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 PLET1Q6UQ28 207 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 SLC16A13Q7RTY0 426 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 OR5B3Q8NH48 314 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 MRPL27Q9P0M9 148 aaKnown RBP12.21□□□□□ -0.45
COL9A3-208ENST00000469802 PRNDQ9UKY0 176 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 NSG2Q9Y328 171 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 UFC1Q9Y3C8 167 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 OR51B2Q9Y5P1 312 aa12.21□□□□□ -0.45
COL9A3-208ENST00000469802 DNAH1Q9P2D7 4330 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 TRAV25A0A0B4J276 109 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 IGHV3-35A0A0C4DH35 117 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 SMIM31A0A1B0GVY4 71 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 K7EIM0 57 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 HPGDSO60760 199 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 UCP3P55916 312 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 LPCAT3Q6P1A2 487 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 SNX29P2Q8IUI4 249 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 BSCL2Q96G97 398 aaPredicted RBP12.2□□□□□ -0.46
COL9A3-208ENST00000469802 SEC22AQ96IW7 307 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 FAM110AQ9BQ89 295 aa12.2□□□□□ -0.46
COL9A3-208ENST00000469802 SNAPC5O75971 98 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 SCAF4O95104 1147 aaKnown RBP12.19□□□□□ -0.46
COL9A3-208ENST00000469802 GABARAPO95166 117 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 IGKV1-39P01597 117 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 IGKV1D-39P04432 117 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 SMIM18P0DKX4 95 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 ADMP35318 185 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 SPSB3Q6PJ21 355 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 TBC1D26Q86UD7 250 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 SLC38A6Q8IZM9 456 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 OR52B4Q8NGK2 314 aa12.19□□□□□ -0.46
COL9A3-208ENST00000469802 SCARB1Q8WTV0 552 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms