RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 TMEM56Q96MV1 263 aa11.81□□□□□ -0.52
LIMS1-210ENST00000449684 PRNDQ9UKY0 176 aa11.81□□□□□ -0.52
LIMS1-210ENST00000449684 TPPPO94811 219 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 CD3DP04234 171 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 CLEC3BP05452 202 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 TBPP20226 339 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 ZNF585BQ52M93 769 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 H2BFWTQ7Z2G1 175 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 SBSPONQ8IVN8 264 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 ARRDC1Q8N5I2 433 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 OR2K2Q8NGT1 345 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 OR4A16Q8NH70 328 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 RAB2BQ8WUD1 216 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 LSM10Q969L4 123 aaKnown RBP11.8□□□□□ -0.52
LIMS1-210ENST00000449684 TUBA4BQ9H853 241 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 FAM212BQ9NTI7 297 aaPredicted RBP11.8□□□□□ -0.52
LIMS1-210ENST00000449684 MTFP1Q9UDX5 166 aa11.8□□□□□ -0.52
LIMS1-210ENST00000449684 MFSD2BA6NFX1 497 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 IGHV4-30-4P0DP06 118 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 TAS2R19P59542 299 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 SPCS2Q15005 226 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 SCGB2B2Q4G0G5 96 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 PLET1Q6UQ28 207 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 GPHB5Q86YW7 130 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 GDPD1Q8N9F7 314 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 ZNF486Q96H40 463 aaPredicted RBP11.79□□□□□ -0.52
LIMS1-210ENST00000449684 CCDC140Q96MF4 163 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 ABHD1Q96SE0 405 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 ZC4H2Q9NQZ6 224 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 NDUFA4L2Q9NRX3 87 aa11.79□□□□□ -0.52
LIMS1-210ENST00000449684 C2orf70A6NJV1 201 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 LGALS9O00182 355 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 CTDSP2O14595 271 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 FOLR2P14207 255 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 GPR183P32249 361 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 MRPS10P82664 201 aaKnown RBP11.78□□□□□ -0.52
LIMS1-210ENST00000449684 WT1-ASQ06250 92 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 LAX1Q8IWV1 398 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 CADM3Q8N126 398 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 Q8N1Y9 231 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 TMEM229BQ8NBD8 167 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 OR5B3Q8NH48 314 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 ZFAND1Q8TCF1 268 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 PALMDQ9NP74 551 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 SLC2A8Q9NY64 477 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 COPZ2Q9P299 210 aa11.78□□□□□ -0.52
LIMS1-210ENST00000449684 IZUMO1RA6ND01 250 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 GABARAPH6UMI1 98 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 ATG12O94817 140 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 RAB3DO95716 219 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 PI3P19957 117 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 PTBP1P26599 531 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIMS1-210ENST00000449684 PPP5CP53041 499 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 TMBIM6P55061 237 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 PIGPP57054 158 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 IL18Q14116 193 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 GUCA2BQ16661 112 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 KLK9Q2XQG4 91 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 CD300EQ496F6 205 aaPredicted RBP11.77□□□□□ -0.53
LIMS1-210ENST00000449684 CCDC71LQ8N9Z2 235 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 OR1L6Q8NGR2 347 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 VN1R17PQ8TDU5 208 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 MRGPRFQ96AM1 343 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 DIRAS2Q96HU8 199 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 RCHY1Q96PM5 261 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 BCL7BQ9BQE9 202 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 C6orf62Q9GZU0 229 aaPredicted RBP11.77□□□□□ -0.53
LIMS1-210ENST00000449684 MIXL1Q9H2W2 232 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 TECRQ9NZ01 308 aaKnown RBP11.77□□□□□ -0.53
LIMS1-210ENST00000449684 KLK9Q9UKQ9 250 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 DMRT1Q9Y5R6 373 aa11.77□□□□□ -0.53
LIMS1-210ENST00000449684 C15orf61A6NNL5 157 aa11.76□□□□□ -0.53
LIMS1-210ENST00000449684 RPL5P46777 297 aaKnown RBP11.76□□□□□ -0.53
LIMS1-210ENST00000449684 RND3P61587 244 aa11.76□□□□□ -0.53
LIMS1-210ENST00000449684 SSBP1Q04837 148 aaKnown RBP11.76□□□□□ -0.53
LIMS1-210ENST00000449684 STEAP1BQ6NZ63 245 aa11.76□□□□□ -0.53
LIMS1-210ENST00000449684 TERB2Q8NHR7 220 aa11.76□□□□□ -0.53
LIMS1-210ENST00000449684 ZNF502Q8TBZ5 544 aa11.76□□□□□ -0.53
LIMS1-210ENST00000449684 SEC22AQ96IW7 307 aa11.76□□□□□ -0.53
LIMS1-210ENST00000449684 F11RQ9Y624 299 aaKnown RBP11.76□□□□□ -0.53
LIMS1-210ENST00000449684 IGHV3-21A0A0B4J1V1 117 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 DISC1C4P0D8 188 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 CBLN1P23435 193 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 AKR1C2P52895 323 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 CD81P60033 236 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 MEF2DQ14814 521 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 TRIM16LQ309B1 348 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 DEFB114Q30KQ6 69 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 LHFPL1Q86WI0 220 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 UBAC2Q8NBM4 344 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 RNASE11Q8TAA1 199 aaKnown RBP11.75□□□□□ -0.53
LIMS1-210ENST00000449684 TMEM14BQ9NUH8 114 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 C21orf62Q9NYP8 219 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 CCDC59Q9P031 241 aaKnown RBP11.75□□□□□ -0.53
LIMS1-210ENST00000449684 RABL2AQ9UBK7 228 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-210ENST00000449684 RABL2BQ9UNT1 228 aa11.75□□□□□ -0.53
LIMS1-210ENST00000449684 C14orf166Q9Y224 244 aaKnown RBP11.75□□□□□ -0.53
LIMS1-210ENST00000449684 TENM3Q9P273 2699 aa11.74□□□□□ -0.53
LIMS1-210ENST00000449684 IGHV3-35A0A0C4DH35 117 aa11.74□□□□□ -0.53
LIMS1-210ENST00000449684 C3orf85A0A1B0GTC6 90 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms