RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 IGKV1D-43A0A0B4J1Z2 117 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 MSGN1A6NI15 193 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 LYNX1G3V0Z9 82 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 SLC17A3O00476 420 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 LYNX1P0DP58 116 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 C2orf68Q2NKX9 166 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 GATAD1Q8WUU5 269 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 SDF2L1Q9HCN8 221 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 TPRP12270 2363 aaKnown RBP12.99□□□□□ -0.33
PTPRF-206ENST00000429895 TMEM14DPA8MWL7 114 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 TFF1P04155 84 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 SAA1P0DJI8 122 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-206ENST00000429895 RTN4RL2Q86UN3 420 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 PARD6GQ9BYG4 376 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-206ENST00000429895 GP6Q9HCN6 339 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 PLSCR2Q9NRY7 297 aa12.99□□□□□ -0.33
PTPRF-206ENST00000429895 SOX21Q9Y651 276 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-206ENST00000429895 LDLRAD2Q5SZI1 272 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 LINC01590Q5TEZ4 76 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 NDUFA3O95167 84 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 CCL3L1P16619 93 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 MRPL16Q9NX20 251 aaKnown RBP12.98□□□□□ -0.33
PTPRF-206ENST00000429895 KBTBD11-OT1A0A1B0GTJ5 212 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 TM4SF5O14894 197 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 APOHP02749 345 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-206ENST00000429895 PRB4P10163 310 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-206ENST00000429895 TMEM183AQ8IXX5 376 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 ZCCHC24Q8N2G6 241 aaKnown RBP12.98□□□□□ -0.33
PTPRF-206ENST00000429895 OSR1Q8TAX0 266 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-206ENST00000429895 IGLV3-21P80748 117 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-206ENST00000429895 POC1AQ8NBT0 407 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 NUDT11Q96G61 164 aa12.98□□□□□ -0.33
PTPRF-206ENST00000429895 TRBV7-9A0A0J9YWB2 115 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 DANCRP0C864 163 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 ZIC4Q8N9L1 334 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 SCO2A0A1W2PP80 73 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 HIST1H2BAQ96A08 127 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 SMIM13P0DJ93 91 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 TDRD15B5MCY1 1934 aaKnown RBP12.97□□□□□ -0.33
PTPRF-206ENST00000429895 LOC390937A0A1W2PQ73 354 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 ZNF708P17019 499 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 NAT1P18440 290 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 PSG7Q13046 419 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 ST6GALNAC3Q8NDV1 305 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 TCRBV4S1A1TA0A5B7 111 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 CXorf65A6NEN9 183 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 H3BRM9 83 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 SRD5A1P18405 259 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 UCP3P55916 312 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 NUDT10Q8NFP7 164 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 OR52E5Q8NH55 327 aa12.97□□□□□ -0.33
PTPRF-206ENST00000429895 NPDC1Q9NQX5 325 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-206ENST00000429895 CD7P09564 240 aa12.96□□□□□ -0.33
PTPRF-206ENST00000429895 CNTFRP26992 372 aa12.96□□□□□ -0.33
PTPRF-206ENST00000429895 RNASEH2CQ8TDP1 164 aaKnown RBP12.96□□□□□ -0.33
PTPRF-206ENST00000429895 CBLN4Q9NTU7 201 aa12.96□□□□□ -0.33
PTPRF-206ENST00000429895 C17orf100A8MU93 164 aa12.96□□□□□ -0.33
PTPRF-206ENST00000429895 TMEM105Q8N8V8 129 aa12.96□□□□□ -0.33
PTPRF-206ENST00000429895 ZNF837Q96EG3 531 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-206ENST00000429895 MARF1Q9Y4F3 1742 aaKnown RBP12.96□□□□□ -0.33
PTPRF-206ENST00000429895 HOXA5P20719 270 aa12.96□□□□□ -0.34
PTPRF-206ENST00000429895 ST6GALNAC6Q969X2 333 aa12.96□□□□□ -0.34
PTPRF-206ENST00000429895 WDYHV1Q96HA8 205 aa12.96□□□□□ -0.34
PTPRF-206ENST00000429895 NPFFR1Q9GZQ6 430 aa12.96□□□□□ -0.34
PTPRF-206ENST00000429895 MIR17HGQ75NE6 70 aa12.96□□□□□ -0.34
PTPRF-206ENST00000429895 BEND2Q8NDZ0 799 aa12.96□□□□□ -0.34
PTPRF-206ENST00000429895 IMMP2LQ96T52 175 aa12.96□□□□□ -0.34
PTPRF-206ENST00000429895 TMEM250H0YL14 139 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 GFI1BQ5VTD9 330 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 UNC13CQ8NB66 2214 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 OR11H4Q8NGC9 324 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 LTBRP36941 435 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 Q5BKY6 102 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 ZNF324BQ6AW86 544 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-206ENST00000429895 TDRD6O60522 2096 aaKnown RBP12.95□□□□□ -0.34
PTPRF-206ENST00000429895 Q9H3A6 140 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 RPRMQ9NS64 109 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 J3QW42 95 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 OR5AN1Q8NGI8 311 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 METRNQ9UJH8 293 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 TRBV9A0A0B4J1U6 114 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 LEMD1Q68G75 181 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 TMEM42Q69YG0 159 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 TUBGCP6Q96RT7 1819 aa12.95□□□□□ -0.34
PTPRF-206ENST00000429895 C1QTNF9BB2RNN3 333 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 LHX2P50458 406 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 TMEM167AQ8TBQ9 72 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 RNASE6Q93091 150 aaKnown RBP12.94□□□□□ -0.34
PTPRF-206ENST00000429895 CA7P43166 264 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 TBR1Q16650 682 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 PRSS22Q9GZN4 317 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 JKAMPQ9P055 326 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 ZNF415Q09FC8 603 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 ZP1P60852 638 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 GNG5P63218 68 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 C10orf126Q8N4M7 172 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 GPX4P36969 197 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-206ENST00000429895 ATP5G3P48201 142 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 FMC1Q96HJ9 113 aa12.94□□□□□ -0.34
PTPRF-206ENST00000429895 LINC00527Q9UJ94 153 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms