RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 LINC00304Q8N9R0 145 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 APCDD1LQ8NCL9 501 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 KLK6Q92876 244 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 HIST1H2BAQ96A08 127 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 HOPXQ9BPY8 73 aaPredicted RBP2.1□□□□□ -2.07
USP40-204ENST00000427947 SEC22CQ9BRL7 303 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 SLC23A2Q9UGH3 650 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 MRPS16Q9Y3D3 137 aaKnown RBP2.1□□□□□ -2.07
USP40-204ENST00000427947 OR51B4Q9Y5P0 310 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 ZNF532Q9HCE3 1301 aa2.1□□□□□ -2.07
USP40-204ENST00000427947 DENND4BO75064 1496 aaPredicted RBP2.09□□□□□ -2.07
USP40-204ENST00000427947 COL1A1P02452 1464 aaPredicted RBP2.09□□□□□ -2.07
USP40-204ENST00000427947 NEO1Q92859 1461 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 IGHV3OR16-8A0A075B7F1 116 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 OR4C46A6NHA9 309 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 OR4C45A6NMZ5 311 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 KNCNA6PVL3 124 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 ZNF878C9JN71 531 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 INMT-MINDY4F8WBC2 141 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 PDE6DO43924 150 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 CRYZL1O95825 349 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 HAND1O96004 215 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 OR4E1P0C645 316 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 ESDP10768 282 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 CD34P28906 385 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 BTN3A2P78410 334 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 KCNJ8Q15842 424 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 LDLRAD2Q5SZI1 272 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 LPCAT3Q6P1A2 487 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 DHRS4L2Q6PKH6 230 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 SPINT4Q6UDR6 99 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 ALKAL1Q6UXT8 129 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 AKAP14Q86UN6 197 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 LRP11Q86VZ4 500 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 UMODL1-AS1Q8N2C9 162 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 PACRGLQ8N7B6 248 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 OR4K13Q8NH42 304 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 MCFD2Q8NI22 146 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 RAB2BQ8WUD1 216 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 BORCS7Q96B45 105 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 MS4A6EQ96DS6 147 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 CPNE2Q96FN4 548 aaPredicted RBP2.09□□□□□ -2.07
USP40-204ENST00000427947 TBX5Q99593 518 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 PRRT1Q99946 306 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 B9D2Q9BPU9 175 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 OR2D2Q9H210 308 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 C14orf105Q9NVL8 296 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 VPREB3Q9UKI3 123 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 ANGPT4Q9Y264 503 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 MUC5ACP98088 5654 aa2.09□□□□□ -2.07
USP40-204ENST00000427947 COL7A1Q02388 2944 aa2.09□□□□□ -2.08
USP40-204ENST00000427947 PREX2Q70Z35 1606 aa2.09□□□□□ -2.08
USP40-204ENST00000427947 SCAPERQ9BY12 1400 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 GOLGA3Q08378 1498 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 DYSFO75923 2080 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.08□□□□□ -2.08
USP40-204ENST00000427947 ARHGEF12Q9NZN5 1544 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 CACNA1DQ01668 2161 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 MAP1AP78559 2803 aaPredicted RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 IGHV3OR15-7A0A075B7D8 119 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 FAM236DA0A1B0GTK5 79 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 H3BMM0 161 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 COX7A2LO14548 114 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 UBE2L6O14933 153 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 OR2B3O76000 313 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 OR7C1O76099 320 aaPredicted RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 IGLV3-27P01718 113 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 RPSAP08865 295 aaKnown RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 FAM236CP0DP71 79 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 ATP6V0CP27449 155 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 CRABP1P29762 137 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 RPL5P46777 297 aaKnown RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 KLF3P57682 345 aaPredicted RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 TAS2R45P59539 299 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 POLR2GP62487 172 aaKnown RBP eCLIP2.08□□□□□ -2.08
USP40-204ENST00000427947 RBX1P62877 108 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 HIST1H3AP68431 136 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 H3F3AP84243 136 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 RUNX1Q01196 453 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 GNA12Q03113 381 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 LGALSLQ3ZCW2 172 aaPredicted RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 TMEM42Q69YG0 159 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 SMIM15Q7Z3B0 74 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 GLT6D1Q7Z4J2 308 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 C20orf196Q8IYI0 205 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 C1orf158Q8N1D5 194 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 OR51A2Q8NGJ7 313 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 UBE2WQ96B02 151 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 GNPNAT1Q96EK6 184 aaPredicted RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 PYURFQ96I23 114 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 CNBD2Q96M20 576 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 CCL13Q99616 98 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 GPR84Q9NQS5 396 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 ARMC1Q9NVT9 282 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 IDI2-AS1Q9NZ38 188 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 RPUSD1Q9UJJ7 312 aaKnown RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 COQ4Q9Y3A0 265 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 UTP11Q9Y3A2 253 aaKnown RBP2.08□□□□□ -2.08
USP40-204ENST00000427947 U3KQK5 164 aa2.08□□□□□ -2.08
USP40-204ENST00000427947 ABCA9Q8IUA7 1624 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms