RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 LCN12Q6JVE5 192 aa17.27■□□□□ 0.36
CTCF-202ENST00000401394 TRIB1Q96RU8 372 aa17.27■□□□□ 0.36
CTCF-202ENST00000401394 IGKV1D-17A0A075B6S4 117 aa17.27■□□□□ 0.35
CTCF-202ENST00000401394 TRGV5A0A0B4J1U4 118 aa17.27■□□□□ 0.35
CTCF-202ENST00000401394 CA2P00918 260 aa17.27■□□□□ 0.35
CTCF-202ENST00000401394 RPLP1P05386 114 aaKnown RBP17.27■□□□□ 0.35
CTCF-202ENST00000401394 CD99P14209 185 aa17.27■□□□□ 0.35
CTCF-202ENST00000401394 PRDX2P32119 198 aa17.27■□□□□ 0.35
CTCF-202ENST00000401394 SNRNP40Q96DI7 357 aaKnown RBP17.27■□□□□ 0.35
CTCF-202ENST00000401394 VAMP8Q9BV40 100 aa17.27■□□□□ 0.35
CTCF-202ENST00000401394 GOLT1BQ9Y3E0 138 aa17.27■□□□□ 0.35
CTCF-202ENST00000401394 V9GYV3 84 aa17.27■□□□□ 0.35
CTCF-202ENST00000401394 IGKV1OR2-108A0A075B7D4 117 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 DLEU1O43261 78 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 MORN5Q5VZ52 161 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 SGK494Q96LW2 274 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 GUCD1Q96NT3 240 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 TBL2Q9Y4P3 447 aaKnown RBP17.26■□□□□ 0.35
CTCF-202ENST00000401394 CER1O95813 267 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 TEX43Q6ZNM6 134 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 Q8N976 141 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 SPRY4Q9C004 299 aa17.26■□□□□ 0.35
CTCF-202ENST00000401394 TNFSF13O75888 250 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 MIEN1Q9BRT3 115 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 TRAV5A0A0B4J249 113 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 SPINT2O43291 252 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 MRPL49Q13405 166 aaKnown RBP17.25■□□□□ 0.35
CTCF-202ENST00000401394 GABRA6Q16445 453 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 VHLLQ6RSH7 139 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 RAB1CQ92928 201 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 SERTAD4Q9NUC0 356 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 BDP1A6H8Y1 2624 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 MGST1P10620 155 aaKnown RBP17.25■□□□□ 0.35
CTCF-202ENST00000401394 CD46P15529 392 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 GNG10P50151 68 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 HES3Q5TGS1 186 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 IFI27L2Q9H2X8 130 aa17.25■□□□□ 0.35
CTCF-202ENST00000401394 LSM4Q9Y4Z0 139 aaKnown RBP17.25■□□□□ 0.35
CTCF-202ENST00000401394 DSCAMO60469 2012 aa17.24■□□□□ 0.35
CTCF-202ENST00000401394 A0A1B0GWJ7 208 aa17.24■□□□□ 0.35
CTCF-202ENST00000401394 CECR9P0C854 216 aa17.24■□□□□ 0.35
CTCF-202ENST00000401394 NTF3P20783 257 aa17.24■□□□□ 0.35
CTCF-202ENST00000401394 AMTP48728 403 aa17.24■□□□□ 0.35
CTCF-202ENST00000401394 SELENOTP62341 195 aa17.24■□□□□ 0.35
CTCF-202ENST00000401394 ZNF503Q96F45 646 aa17.24■□□□□ 0.35
CTCF-202ENST00000401394 DEFB108BQ8NET1 73 aa17.24■□□□□ 0.35
CTCF-202ENST00000401394 HTD2P86397 168 aa17.23■□□□□ 0.35
CTCF-202ENST00000401394 RELNP78509 3460 aa17.23■□□□□ 0.35
CTCF-202ENST00000401394 C19orf67A6NJJ6 358 aa17.23■□□□□ 0.35
CTCF-202ENST00000401394 CD24P25063 80 aa17.23■□□□□ 0.35
CTCF-202ENST00000401394 SUMO1P63165 101 aaKnown RBP17.23■□□□□ 0.35
CTCF-202ENST00000401394 S1PR3Q99500 378 aa17.23■□□□□ 0.35
CTCF-202ENST00000401394 ZNF318Q5VUA4 2279 aa17.23■□□□□ 0.35
CTCF-202ENST00000401394 PCNX1Q96RV3 2341 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 DIRC3C9JPN6 131 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 LAMTOR5O43504 91 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 TDGF1P13385 188 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 SRIP30626 198 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 ZNF83P51522 516 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 MDS2Q8NDY4 140 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 OR7C2O60412 319 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 LOXL3P58215 753 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 RPEL1Q2QD12 228 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 DHRS13Q6UX07 377 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 ERASQ7Z444 233 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 SIGLECL1Q8N7X8 197 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 NPVFQ9HCQ7 196 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 NRN1Q9NPD7 142 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 TANC2Q9HCD6 1990 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 GGTLC3B5MD39 225 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 MMP23AO75900 390 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 GPX1P07203 203 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 OR4A47Q6IF82 309 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 TEPPQ6URK8 271 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 FAM214BQ7L5A3 538 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 STPG4Q8N801 248 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 WDR31Q8NA23 367 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 OR9G1Q8NH87 305 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 CXXC4Q9H2H0 198 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 ARRDC1-AS1Q9H2J1 176 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 ABI3Q9P2A4 366 aa17.22■□□□□ 0.35
CTCF-202ENST00000401394 IGKV1-16P04430 117 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 FAM90A1Q86YD7 464 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 OR10W1Q8NGF6 305 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 A0A1W2PS18 150 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 HELTA6NFD8 242 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 KLRC4-KLRK1H3BQV0 150 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 LINC00869P0C866 280 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 NPY1RP25929 384 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 GNG4P50150 75 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 ERVK-16P61578 105 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 SSBP2P81877 361 aaPredicted RBP17.21■□□□□ 0.35
CTCF-202ENST00000401394 SLC24A4Q8NFF2 622 aa17.21■□□□□ 0.35
CTCF-202ENST00000401394 A0A1W2PN81 502 aa17.2■□□□□ 0.34
CTCF-202ENST00000401394 GPR6P46095 362 aaPredicted RBP17.2■□□□□ 0.34
CTCF-202ENST00000401394 TMEM183BQ1AE95 376 aa17.2■□□□□ 0.34
CTCF-202ENST00000401394 CT45A1Q5HYN5 189 aa17.2■□□□□ 0.34
CTCF-202ENST00000401394 CT45A3Q8NHU0 189 aa17.2■□□□□ 0.34
CTCF-202ENST00000401394 RND1Q92730 232 aa17.2■□□□□ 0.34
CTCF-202ENST00000401394 SAA2-SAA4A0A096LPE2 208 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms