RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 MOB3BQ86TA1 216 aa20.35■□□□□ 0.85
SHOX2-201ENST00000389589 TEX45Q8NA69 505 aa20.35■□□□□ 0.85
SHOX2-201ENST00000389589 MAP1LC3BQ9GZQ8 125 aa20.35■□□□□ 0.85
SHOX2-201ENST00000389589 TMA7Q9Y2S6 64 aaKnown RBP20.35■□□□□ 0.85
SHOX2-201ENST00000389589 CTXND1A0A1B0GTU2 59 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 OVOL3O00110 214 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 IGKV1D-33P01593 117 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 IGKV1-33P01594 117 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 ERHP84090 104 aaKnown RBP20.34■□□□□ 0.85
SHOX2-201ENST00000389589 HAGHQ16775 308 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 ACOT6Q3I5F7 207 aaPredicted RBP20.34■□□□□ 0.85
SHOX2-201ENST00000389589 KIR3DL3Q8N743 410 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 ACTR3CQ9C0K3 210 aaPredicted RBP20.34■□□□□ 0.85
SHOX2-201ENST00000389589 KCNIP2Q9NS61 270 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 HSPB1P04792 205 aaKnown RBP20.34■□□□□ 0.85
SHOX2-201ENST00000389589 PRTN3P24158 256 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 OPRK1P41145 380 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 PRB3Q04118 309 aaPredicted RBP20.34■□□□□ 0.85
SHOX2-201ENST00000389589 KHDC3LQ587J8 217 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 SSX7Q7RTT5 188 aa20.34■□□□□ 0.85
SHOX2-201ENST00000389589 ZNF430Q9H8G1 570 aaPredicted RBP20.34■□□□□ 0.85
SHOX2-201ENST00000389589 SLC25A17O43808 307 aa20.33■□□□□ 0.85
SHOX2-201ENST00000389589 PMS2P11Q13670 270 aa20.33■□□□□ 0.85
SHOX2-201ENST00000389589 UNKLQ9H9P5 680 aaKnown RBP20.33■□□□□ 0.85
SHOX2-201ENST00000389589 CACNA1BQ00975 2339 aa20.33■□□□□ 0.85
SHOX2-201ENST00000389589 ARHGAP32A7KAX9 2087 aa20.33■□□□□ 0.85
SHOX2-201ENST00000389589 IGHV3-72A0A0B4J1Y9 119 aa20.33■□□□□ 0.84
SHOX2-201ENST00000389589 CYB5BO43169 146 aa20.33■□□□□ 0.84
SHOX2-201ENST00000389589 ICAM4Q14773 271 aa20.33■□□□□ 0.84
SHOX2-201ENST00000389589 LSM4Q9Y4Z0 139 aaKnown RBP20.33■□□□□ 0.84
SHOX2-201ENST00000389589 DNASE2O00115 360 aaPredicted RBP20.32■□□□□ 0.84
SHOX2-201ENST00000389589 HTR1DP28221 377 aa20.32■□□□□ 0.84
SHOX2-201ENST00000389589 ARSJQ5FYB0 599 aaPredicted RBP20.32■□□□□ 0.84
SHOX2-201ENST00000389589 GNG13Q9P2W3 67 aa20.32■□□□□ 0.84
SHOX2-201ENST00000389589 LOC102723971A0A1B0GUV8 181 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 IFNA1P01562 189 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 IGHV2-5P01817 119 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 RNASE2P10153 161 aaKnown RBP20.31■□□□□ 0.84
SHOX2-201ENST00000389589 TEPPQ6URK8 271 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 CLRN3Q8NCR9 226 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 RITA1Q96K30 269 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 MGST2Q99735 147 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 RNF5Q99942 180 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 SIRT7Q9NRC8 400 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 USP24Q9UPU5 2620 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 CEACAM3P40198 252 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 NPBWR1P48145 328 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 FGF8P55075 233 aaPredicted RBP20.31■□□□□ 0.84
SHOX2-201ENST00000389589 RAB31Q13636 194 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 TPTE2P1Q5T6R2 138 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 OR10W1Q8NGF6 305 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 DPM3Q9P2X0 92 aa20.31■□□□□ 0.84
SHOX2-201ENST00000389589 SRP19P09132 144 aaKnown RBP20.3■□□□□ 0.84
SHOX2-201ENST00000389589 SOHLH1Q5JUK2 328 aa20.3■□□□□ 0.84
SHOX2-201ENST00000389589 MMD2Q8IY49 270 aa20.3■□□□□ 0.84
SHOX2-201ENST00000389589 GGTLC1Q9BX51 225 aa20.3■□□□□ 0.84
SHOX2-201ENST00000389589 OR13C7P0DN81 318 aa20.3■□□□□ 0.84
SHOX2-201ENST00000389589 BCL2P10415 239 aa20.3■□□□□ 0.84
SHOX2-201ENST00000389589 RXFP4Q8TDU9 374 aa20.3■□□□□ 0.84
SHOX2-201ENST00000389589 SLC25A22Q9H936 323 aa20.3■□□□□ 0.84
SHOX2-201ENST00000389589 CRYGBP07316 175 aa20.29■□□□□ 0.84
SHOX2-201ENST00000389589 FAM122CQ6P4D5 195 aa20.29■□□□□ 0.84
SHOX2-201ENST00000389589 MRPL41Q8IXM3 137 aaKnown RBP20.29■□□□□ 0.84
SHOX2-201ENST00000389589 A0A1W2PPI3 338 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 ODF3BA8MYP8 253 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 MAS1LP35410 378 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 PSG5Q15238 335 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 RBMS3Q6XE24 437 aaKnown RBP20.28■□□□□ 0.84
SHOX2-201ENST00000389589 KLF2Q9Y5W3 355 aaPredicted RBP20.28■□□□□ 0.84
SHOX2-201ENST00000389589 FAM74A7A6NL05 159 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 SEC14L6B5MCN3 397 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 SUB1P53999 127 aaKnown RBP eCLIP20.28■□□□□ 0.84
SHOX2-201ENST00000389589 PRSS8Q16651 343 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 FAM74A3Q4VXF1 159 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 RAB24Q969Q5 203 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 C1orf159Q96HA4 380 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 PXMP4Q9Y6I8 212 aa20.28■□□□□ 0.84
SHOX2-201ENST00000389589 CGB1A6NKQ9 187 aa20.27■□□□□ 0.84
SHOX2-201ENST00000389589 ZFP92A6NM28 416 aa20.27■□□□□ 0.84
SHOX2-201ENST00000389589 E7EUB6 86 aa20.27■□□□□ 0.84
SHOX2-201ENST00000389589 CDC34P49427 236 aaPredicted RBP20.27■□□□□ 0.84
SHOX2-201ENST00000389589 MRGPRG-AS1Q2M3A8 158 aa20.27■□□□□ 0.84
SHOX2-201ENST00000389589 HCP5Q6MZN7 132 aa20.27■□□□□ 0.84
SHOX2-201ENST00000389589 TPSG1Q9NRR2 321 aa20.27■□□□□ 0.84
SHOX2-201ENST00000389589 ZFP36P26651 326 aaKnown RBP20.26■□□□□ 0.83
SHOX2-201ENST00000389589 TAGLN2P37802 199 aaKnown RBP20.26■□□□□ 0.83
SHOX2-201ENST00000389589 TMEM144Q7Z5S9 345 aa20.26■□□□□ 0.83
SHOX2-201ENST00000389589 IGFBPL1Q8WX77 278 aa20.26■□□□□ 0.83
SHOX2-201ENST00000389589 SIGLEC9Q9Y336 463 aa20.26■□□□□ 0.83
SHOX2-201ENST00000389589 NUPL2O15504 423 aaKnown RBP20.26■□□□□ 0.83
SHOX2-201ENST00000389589 ACTL6BO94805 426 aa20.26■□□□□ 0.83
SHOX2-201ENST00000389589 GPX4P36969 197 aaPredicted RBP20.26■□□□□ 0.83
SHOX2-201ENST00000389589 CACNG8Q8WXS5 425 aa20.26■□□□□ 0.83
SHOX2-201ENST00000389589 P2RX4Q99571 388 aa20.26■□□□□ 0.83
SHOX2-201ENST00000389589 SPOCK3Q9BQ16 436 aa20.26■□□□□ 0.83
SHOX2-201ENST00000389589 VAX2Q9UIW0 290 aa20.26■□□□□ 0.83
SHOX2-201ENST00000389589 WT1-ASQ06250 92 aa20.25■□□□□ 0.83
SHOX2-201ENST00000389589 YIF1AO95070 293 aa20.25■□□□□ 0.83
SHOX2-201ENST00000389589 RPL29P47914 159 aaKnown RBP20.25■□□□□ 0.83
SHOX2-201ENST00000389589 PDLIM4P50479 330 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms