RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 PDZD2O15018 2839 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 BORCS7-ASMTA0A0B4J1R7 106 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 A0A0U1RQK1 487 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 C15orf62A8K5M9 175 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 ACTL6BO94805 426 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 IFNA10P01566 189 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 HBG1P69891 147 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 HBG2P69892 147 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 ARL16Q0P5N6 197 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 C10orf55Q5SWW7 151 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 FAM120AOSQ5T036 256 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 HAPLN4Q86UW8 402 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 BAP18Q8IXM2 172 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 STPG2Q8N412 459 aa14.93□□□□□ -0.02
CLN3-204ENST00000357857 TNXAQ16473 311 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 OR8G2PQ6IF36 304 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 ALKAL2Q6UX46 152 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 UBAC2Q8NBM4 344 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 A0A1W2PN81 502 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 CHRNA7P36544 502 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 ZNF266Q14584 549 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 PHYHIPLQ96FC7 376 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 ATP5SQ99766 215 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 MEGF9Q9H1U4 602 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 FAM96BQ9Y3D0 163 aa14.92□□□□□ -0.02
CLN3-204ENST00000357857 CGB1A6NKQ9 187 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 PMS2P5A8MQ11 134 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 E7EUB6 86 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 DFFBO76075 338 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 SCAF4O95104 1147 aaKnown RBP14.91□□□□□ -0.02
CLN3-204ENST00000357857 OR8U8P0C7N1 319 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 RPL27AP46776 148 aaKnown RBP14.91□□□□□ -0.02
CLN3-204ENST00000357857 COMPP49747 757 aaPredicted RBP14.91□□□□□ -0.02
CLN3-204ENST00000357857 GNB1P62873 340 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 SLC38A11Q08AI6 406 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 SLC24A4Q8NFF2 622 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 OR10W1Q8NGF6 305 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 SCARB1Q8WTV0 552 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 CREBBPQ92793 2442 aa14.91□□□□□ -0.02
CLN3-204ENST00000357857 ABCA1O95477 2261 aa14.9□□□□□ -0.02
CLN3-204ENST00000357857 INS-IGF2F8WCM5 200 aa14.9□□□□□ -0.02
CLN3-204ENST00000357857 NPY1RP25929 384 aa14.9□□□□□ -0.02
CLN3-204ENST00000357857 RAB11AP62491 216 aa14.9□□□□□ -0.02
CLN3-204ENST00000357857 C5orf64Q2M2E5 130 aa14.9□□□□□ -0.02
CLN3-204ENST00000357857 CIARTQ8N365 385 aaPredicted RBP14.9□□□□□ -0.02
CLN3-204ENST00000357857 LILRB2Q8N423 598 aa14.9□□□□□ -0.02
CLN3-204ENST00000357857 OR10P1Q8NGE3 313 aa14.9□□□□□ -0.02
CLN3-204ENST00000357857 ITPR2Q14571 2701 aa14.9□□□□□ -0.02
CLN3-204ENST00000357857 A0A1B0GW64 132 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 NCBP2LA6PVI3 153 aaKnown RBP14.89□□□□□ -0.03
CLN3-204ENST00000357857 FCN1O00602 326 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 FBP1P09467 338 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 BPIFB3P59826 476 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 ERHP84090 104 aaKnown RBP14.89□□□□□ -0.03
CLN3-204ENST00000357857 PINX1Q96BK5 328 aaKnown RBP14.89□□□□□ -0.03
CLN3-204ENST00000357857 ARV1Q9H2C2 271 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 C1RLQ9NZP8 487 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 SETXQ7Z333 2677 aaKnown RBP14.89□□□□□ -0.03
CLN3-204ENST00000357857 SMAD7O15105 426 aaKnown RBP14.89□□□□□ -0.03
CLN3-204ENST00000357857 CA2P00918 260 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 HTR2BP41595 481 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 ETV3LQ6ZN32 361 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 TMEM170AQ8WVE7 144 aa14.89□□□□□ -0.03
CLN3-204ENST00000357857 SOX21Q9Y651 276 aaPredicted RBP14.89□□□□□ -0.03
CLN3-204ENST00000357857 CCDC168Q8NDH2 2452 aa14.88□□□□□ -0.03
CLN3-204ENST00000357857 ATP5IP56385 69 aaPredicted RBP14.88□□□□□ -0.03
CLN3-204ENST00000357857 ATP6V1FQ16864 119 aa14.88□□□□□ -0.03
CLN3-204ENST00000357857 MRPL41Q8IXM3 137 aaKnown RBP14.88□□□□□ -0.03
CLN3-204ENST00000357857 GINS3Q9BRX5 216 aa14.88□□□□□ -0.03
CLN3-204ENST00000357857 ITPR3Q14573 2671 aa14.88□□□□□ -0.03
CLN3-204ENST00000357857 CNIH1O95406 144 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 IFNA5P01569 189 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 IFNA4P05014 189 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 SNCAP37840 140 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 SSBP2P81877 361 aaPredicted RBP14.87□□□□□ -0.03
CLN3-204ENST00000357857 WT1-ASQ06250 92 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 LRRC75BQ2VPJ9 315 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 BSXQ3C1V8 233 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 NANPQ8TBE9 248 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 SRSF12Q8WXF0 261 aaKnown RBP14.87□□□□□ -0.03
CLN3-204ENST00000357857 SSX3Q99909 188 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 CSPG4Q6UVK1 2322 aa14.87□□□□□ -0.03
CLN3-204ENST00000357857 FSHBP01225 129 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 OR13C7P0DN81 318 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 RNASE2P10153 161 aaKnown RBP14.86□□□□□ -0.03
CLN3-204ENST00000357857 C2orf83Q53S99 150 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 EIF5AL1Q6IS14 154 aaKnown RBP14.86□□□□□ -0.03
CLN3-204ENST00000357857 HSD17B11Q8NBQ5 300 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 TMED6Q8WW62 240 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 TMEM147Q9BVK8 224 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 NAV3Q8IVL0 2385 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 IGLC7A0M8Q6 106 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 FBXO24O75426 580 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 FAM74A1Q5RGS3 127 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 SLC25A24Q6NUK1 477 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 Q8N9W7 124 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 PIFOQ8TCI5 191 aa14.86□□□□□ -0.03
CLN3-204ENST00000357857 TEX22C9J3V5 150 aa14.85□□□□□ -0.03
CLN3-204ENST00000357857 PRSS46E5RG02 174 aa14.85□□□□□ -0.03
CLN3-204ENST00000357857 RAB14P61106 215 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms