RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 DDB2Q92466 427 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 HIST1H2BAQ96A08 127 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 TXN2Q99757 166 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 UQCC1Q9NVA1 299 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 CSMD1Q96PZ7 3565 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 DUXBA0A1W2PPF3 345 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 ODF3BA8MYP8 253 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 FAM157CP0CG43 387 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 DDTP30046 118 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 H2BFWTQ7Z2G1 175 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 C1QL4Q86Z23 238 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 VKORC1L1Q8N0U8 176 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 ZFP82Q8N141 532 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 SPIN2AQ99865 258 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 SPIN2BQ9BPZ2 258 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.11□□□□□ -1.113e-8■■■■■ 32.7
HMGB3-201ENST00000325307 IGHV1-3A0A0C4DH29 117 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 H0YJW9 148 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 RBFOX2O43251 390 aaKnown RBP eCLIP8.11□□□□□ -1.11
HMGB3-201ENST00000325307 IGKV1-16P04430 117 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 AKIRIN2Q53H80 203 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 TMPRSS5Q9H3S3 457 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 PLEKHA2Q9HB19 425 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 WASHC3Q9Y3C0 194 aa8.11□□□□□ -1.11
HMGB3-201ENST00000325307 CENPVL3A0A0U1RRI6 287 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 K7EPK0 472 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 NPFFO15130 113 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 NXPH3O95157 252 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 IGKV1-5P01602 117 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 SAA4P35542 130 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 RPS16P62249 146 aaKnown RBP8.1□□□□□ -1.11
HMGB3-201ENST00000325307 LDLRAD2Q5SZI1 272 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 CIARTQ8N365 385 aaPredicted RBP8.1□□□□□ -1.11
HMGB3-201ENST00000325307 FAM71E2Q8N5Q1 922 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 OR4D5Q8NGN0 318 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 C11orf1Q9H5F2 150 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 PLA2G2EQ9NZK7 142 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 TIMM23O14925 209 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 NPSP0C0P6 89 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 NQO2P16083 231 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 MC5RP33032 325 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 MINOS1Q5TGZ0 78 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 RUSC1-AS1Q66K80 236 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 BRD3OSQ6XYD6 125 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 OR5AN1Q8NGI8 311 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 GPR146Q96CH1 333 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 FLYWCH2Q96CP2 140 aaKnown RBP8.1□□□□□ -1.11
HMGB3-201ENST00000325307 C1orf159Q96HA4 380 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 HARBI1Q96MB7 349 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 CACNG5Q9UF02 275 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 MINOS1-NBL1R4GNA1 71 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 PDZD2O15018 2839 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 A0A0G2JRQ6 117 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 LY6LH3BQJ8 138 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 HRASP01112 189 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 CD5P06127 495 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 BLOC1S1P78537 153 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 NMSQ5H8A3 153 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 CCDC144NLQ6NUI1 221 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 SMCO4Q9NRQ5 59 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 ABCA1O95477 2261 aa8.1□□□□□ -1.11
HMGB3-201ENST00000325307 CSPG4Q6UVK1 2322 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 IGHV1-69DA0A0B4J2H0 117 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 CXorf65A6NEN9 183 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 C1orf196B1AJZ1 125 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 IGHV1-69P01742 117 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 CLEC9AQ6UXN8 241 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 PDPNQ86YL7 162 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 LSM10Q969L4 123 aaKnown RBP8.09□□□□□ -1.11
HMGB3-201ENST00000325307 FAM210BQ96KR6 192 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 YPEL4Q96NS1 127 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 RCL1Q9Y2P8 373 aaKnown RBP8.09□□□□□ -1.11
HMGB3-201ENST00000325307 TBL2Q9Y4P3 447 aaKnown RBP8.09□□□□□ -1.11
HMGB3-201ENST00000325307 LSM5Q9Y4Y9 91 aaKnown RBP8.09□□□□□ -1.11
HMGB3-201ENST00000325307 MMP24Q9Y5R2 645 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 MT-ND4LP03901 98 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 PET100P0DJ07 73 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 IGHV4-38-2P0DP08 117 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 FABP9Q0Z7S8 132 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 HES1Q14469 280 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 RPL7L1Q6DKI1 246 aaKnown RBP8.09□□□□□ -1.11
HMGB3-201ENST00000325307 BAP18Q8IXM2 172 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 NUDT10Q8NFP7 164 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 OR4C13Q8NGP0 309 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 TMEM208Q9BTX3 173 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 FLNBO75369 2602 aaKnown RBP8.09□□□□□ -1.11
HMGB3-201ENST00000325307 ITPR3Q14573 2671 aa8.09□□□□□ -1.11
HMGB3-201ENST00000325307 A0A1W2PPI3 338 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 XKRY2A2RUG3 117 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 CD24P25063 80 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 PJVKQ0ZLH3 352 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 HNF4GQ14541 408 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 MIDNQ504T8 468 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 TMED6Q8WW62 240 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 NSG2Q9Y328 171 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 FAM96BQ9Y3D0 163 aa8.09□□□□□ -1.12
HMGB3-201ENST00000325307 A0A1B0GU03 582 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 J3QLI3 93 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 AVPP01185 164 aa8.08□□□□□ -1.12
HMGB3-201ENST00000325307 PIP4P2Q8N4L2 257 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms