RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 COL8A2P25067 703 aa12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 LSM10Q969L4 123 aaKnown RBP12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 SLC35E1Q96K37 410 aa12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 CIB3Q96Q77 187 aaPredicted RBP12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 FAM103A1Q9BTL3 118 aaKnown RBP12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 PARD6GQ9BYG4 376 aaPredicted RBP12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 SLC25A15Q9Y619 301 aa12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 SPTBN1Q01082 2364 aaKnown RBP12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 CGAP01215 116 aa12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 Q8N976 141 aa12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 ITLN1Q8WWA0 313 aa12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 HES4Q9HCC6 221 aa12.87□□□□□ -0.35
SHROOM1-201ENST00000319854 IGKV1D-17A0A075B6S4 117 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 ZG16O60844 167 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 YPEL3P61236 119 aaPredicted RBP12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 MSMO1Q15800 293 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 RPL39P5Q59GN2 51 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 ODAMA1E959 279 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 FCGR3BO75015 233 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 ZNF709Q8N972 641 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 OR5AU1Q8NGC0 362 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 SFRP2Q96HF1 295 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 TIMM9Q9Y5J7 89 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 ASH1LQ9NR48 2969 aaKnown RBP12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 PTPRBP23467 1997 aa12.86□□□□□ -0.35
SHROOM1-201ENST00000319854 BRWD1-AS2P59051 145 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 SELENOTP62341 195 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 CRISP2P16562 243 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 PAFAH1B2P68402 229 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 SLC35E4Q6ICL7 350 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 H2BFWTQ7Z2G1 175 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 AKAP6Q13023 2319 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 DSCAMO60469 2012 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 COL12A1Q99715 3063 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 TRAV38-1A0A0B4J264 116 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 SPINT2O43291 252 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 IGLV1-44P01699 117 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 GCSAMQ8N6F7 178 aa12.85□□□□□ -0.35
SHROOM1-201ENST00000319854 NPIPB11E5RHQ5 1161 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 SLC17A3O00476 420 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 KITLGP21583 273 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 KLF3P57682 345 aaPredicted RBP12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 KRTDAPP60985 99 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 MAJINQ3KP22 176 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 RBMXL3Q8N7X1 1067 aaKnown RBP12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 C1orf162Q8NEQ5 155 aaPredicted RBP12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 SNRNP40Q96DI7 357 aaKnown RBP12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 MRPL18Q9H0U6 180 aaKnown RBP12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 PMS2P5A8MQ11 134 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 M0R1X1 148 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 GPR12P47775 334 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 CATR1Q13166 79 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 HLA-DRB5Q30154 266 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 PRSS33Q8NF86 280 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 NPCDR1Q9BY65 106 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 MED13LQ71F56 2210 aa12.84□□□□□ -0.35
SHROOM1-201ENST00000319854 RNF212BA8MTL3 300 aa12.83□□□□□ -0.35
SHROOM1-201ENST00000319854 TMPRSS2O15393 492 aa12.83□□□□□ -0.35
SHROOM1-201ENST00000319854 CTRLP40313 264 aa12.83□□□□□ -0.35
SHROOM1-201ENST00000319854 KRTCAP3Q53RY4 240 aa12.83□□□□□ -0.35
SHROOM1-201ENST00000319854 BAGE3Q86Y29 109 aa12.83□□□□□ -0.35
SHROOM1-201ENST00000319854 BAGE2Q86Y30 109 aa12.83□□□□□ -0.35
SHROOM1-201ENST00000319854 SAMD10Q9BYL1 202 aa12.83□□□□□ -0.35
SHROOM1-201ENST00000319854 ABCA1O95477 2261 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 HCFC1P51610 2035 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 CD99P14209 185 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 RANP62826 216 aaKnown RBP12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 CCL8P80075 99 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 WFDC8Q8IUA0 241 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 OCC1Q8TAD7 63 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 SVEP1Q4LDE5 3571 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 TRAV34A0A0B4J273 112 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 C20orf202A1L168 122 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 OR5G3P0C626 314 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 ESDP10768 282 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 CEACAM8P31997 349 aaPredicted RBP12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 PTTG1IPP53801 180 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 SAPCD1Q5SSQ6 148 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 OR1L6Q8NGR2 347 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 ZNRD1Q9P1U0 126 aa12.83□□□□□ -0.36
SHROOM1-201ENST00000319854 MBD3L4A6NDZ8 208 aaPredicted RBP12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 MBD3L3A6NE82 208 aaPredicted RBP12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 MBD3L5A6NJ08 208 aaPredicted RBP12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 SPATA45Q537H7 98 aa12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 MBD3L2Q8NHZ7 208 aaPredicted RBP12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 BTF3L4Q96K17 158 aa12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 ZNF134P52741 427 aa12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 ABHD17AQ96GS6 310 aa12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 LRFN3Q9BTN0 628 aa12.82□□□□□ -0.36
SHROOM1-201ENST00000319854 LRRC30A6NM36 301 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 DIRC3C9JPN6 131 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 CDC34P49427 236 aaPredicted RBP12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 C1orf185Q5T7R7 199 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 Q8N7P7 452 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 TMEM147Q9BVK8 224 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 HINT2Q9BX68 163 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 DCHS2Q6V1P9 2916 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 MDFIC2A0A1B0GVS7 189 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 F6UZH7 168 aa12.81□□□□□ -0.36
SHROOM1-201ENST00000319854 ZNF90Q03938 601 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms