RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 AQP10Q96PS8 301 aa14.4□□□□□ -0.1
HMGA1-201ENST00000311487 NDUFA3O95167 84 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 CA2P00918 260 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 VMA21Q3ZAQ7 101 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 C10orf55Q5SWW7 151 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 PPP1R27Q86WC6 154 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 ZNF430Q9H8G1 570 aaPredicted RBP14.39□□□□□ -0.11
HMGA1-201ENST00000311487 C1RLQ9NZP8 487 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 CRYGBP07316 175 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 UBE2KP61086 200 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 ERVK-16P61578 105 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 SRPXP78539 464 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 HIST2H2BDQ6DRA6 164 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 FOXRED2Q8IWF2 684 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 RBPMSQ93062 196 aaKnown RBP14.39□□□□□ -0.11
HMGA1-201ENST00000311487 TMEM56Q96MV1 263 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 TMEM56-RWDD3S4R434 201 aa14.39□□□□□ -0.11
HMGA1-201ENST00000311487 DEDDO75618 318 aa14.38□□□□□ -0.11
HMGA1-201ENST00000311487 NUP62P37198 522 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-201ENST00000311487 ARSJQ5FYB0 599 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-201ENST00000311487 Q6ZRM9 215 aa14.38□□□□□ -0.11
HMGA1-201ENST00000311487 Q6ZSV7 163 aa14.38□□□□□ -0.11
HMGA1-201ENST00000311487 H2BFWTQ7Z2G1 175 aa14.38□□□□□ -0.11
HMGA1-201ENST00000311487 NOL4LQ96MY1 436 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-201ENST00000311487 RNF5Q99942 180 aa14.38□□□□□ -0.11
HMGA1-201ENST00000311487 AIFM2Q9BRQ8 373 aa14.38□□□□□ -0.11
HMGA1-201ENST00000311487 TMED3Q9Y3Q3 217 aa14.38□□□□□ -0.11
HMGA1-201ENST00000311487 E7EUB6 86 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 RBMXL2O75526 392 aaKnown RBP14.37□□□□□ -0.11
HMGA1-201ENST00000311487 KBTBD11O94819 623 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 CNIH1O95406 144 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 CTRB1P17538 263 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 NDPQ00604 133 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 TNXAQ16473 311 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 SPINK9Q5DT21 86 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 CTRB2Q6GPI1 263 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 TCTEX1D1Q8N7M0 179 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-201ENST00000311487 ABHD5Q8WTS1 349 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 CXorf58Q96LI9 332 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 NPFFR1Q9GZQ6 430 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 CYTL1Q9NRR1 136 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 ZMAT5Q9UDW3 170 aaKnown RBP14.37□□□□□ -0.11
HMGA1-201ENST00000311487 LSM5Q9Y4Y9 91 aaKnown RBP14.37□□□□□ -0.11
HMGA1-201ENST00000311487 SCGB1D2O95969 90 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 MBPP02686 304 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-201ENST00000311487 CX3CL1P78423 397 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 SSBP2P81877 361 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-201ENST00000311487 PUSL1Q8N0Z8 303 aaKnown RBP14.37□□□□□ -0.11
HMGA1-201ENST00000311487 STOML3Q8TAV4 291 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 PHYHIPLQ96FC7 376 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 ZNF702PQ9H963 129 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 FBXO7Q9Y3I1 522 aa14.37□□□□□ -0.11
HMGA1-201ENST00000311487 IGHV7-81A0A0B4J1V7 117 aa14.36□□□□□ -0.11
HMGA1-201ENST00000311487 FGF16O43320 207 aa14.36□□□□□ -0.11
HMGA1-201ENST00000311487 HKR1P10072 659 aa14.36□□□□□ -0.11
HMGA1-201ENST00000311487 SMCO1Q147U7 214 aa14.36□□□□□ -0.11
HMGA1-201ENST00000311487 PRSS8Q16651 343 aa14.36□□□□□ -0.11
HMGA1-201ENST00000311487 CCDC28AQ8IWP9 274 aa14.36□□□□□ -0.11
HMGA1-201ENST00000311487 GPR146Q96CH1 333 aa14.36□□□□□ -0.11
HMGA1-201ENST00000311487 PARP11Q9NR21 331 aa14.36□□□□□ -0.11
HMGA1-201ENST00000311487 K7EPK0 472 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 FAM74A1Q5RGS3 127 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 C16orf82Q7Z2V1 217 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 TEX45Q8NA69 505 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 SLC25A32Q9H2D1 315 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 MED9Q9NWA0 146 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 WSB1Q9Y6I7 421 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 UPK2O00526 184 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 FXYD3Q14802 87 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 OR4D5Q8NGN0 318 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 HINT2Q9BX68 163 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 QTRT1Q9BXR0 403 aaKnown RBP14.35□□□□□ -0.11
HMGA1-201ENST00000311487 PRSS22Q9GZN4 317 aa14.35□□□□□ -0.11
HMGA1-201ENST00000311487 G3V318 75 aa14.34□□□□□ -0.11
HMGA1-201ENST00000311487 M0QZK8 103 aa14.34□□□□□ -0.11
HMGA1-201ENST00000311487 HAX1O00165 279 aa14.34□□□□□ -0.11
HMGA1-201ENST00000311487 ATP6V0E1O15342 81 aa14.34□□□□□ -0.11
HMGA1-201ENST00000311487 RPL8P62917 257 aaKnown RBP14.34□□□□□ -0.11
HMGA1-201ENST00000311487 KRTAP24-1Q3LI83 254 aa14.34□□□□□ -0.11
HMGA1-201ENST00000311487 C10orf99Q6UWK7 81 aa14.34□□□□□ -0.11
HMGA1-201ENST00000311487 FAM212BQ9NTI7 297 aaPredicted RBP14.34□□□□□ -0.11
HMGA1-201ENST00000311487 BET1LQ9NYM9 111 aa14.34□□□□□ -0.11
HMGA1-201ENST00000311487 CACNG5Q9UF02 275 aa14.34□□□□□ -0.11
HMGA1-201ENST00000311487 TET2Q6N021 2002 aaPredicted RBP14.34□□□□□ -0.11
HMGA1-201ENST00000311487 DUXBA0A1W2PPF3 345 aa14.33□□□□□ -0.11
HMGA1-201ENST00000311487 TSPAN9O75954 239 aa14.33□□□□□ -0.11
HMGA1-201ENST00000311487 TPT1P13693 172 aaKnown RBP14.33□□□□□ -0.11
HMGA1-201ENST00000311487 MDKP21741 143 aaPredicted RBP14.33□□□□□ -0.11
HMGA1-201ENST00000311487 RPL12P30050 165 aaKnown RBP14.33□□□□□ -0.11
HMGA1-201ENST00000311487 SLC35E3Q7Z769 313 aa14.33□□□□□ -0.11
HMGA1-201ENST00000311487 OR4A16Q8NH70 328 aa14.33□□□□□ -0.11
HMGA1-201ENST00000311487 TMEM167AQ8TBQ9 72 aa14.33□□□□□ -0.11
HMGA1-201ENST00000311487 A0A1B0GW64 132 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 E5RGE8 158 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 ACTL6BO94805 426 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 HLA-DRB1P01911 266 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 P0C879 139 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 POU2AF1Q16633 256 aa14.33□□□□□ -0.12
HMGA1-201ENST00000311487 ECSCRQ19T08 205 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms