RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 H0YJW9 148 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 LY6HO94772 140 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 IFNA10P01566 189 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 IGFBP2P18065 325 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 MC5RP33032 325 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 VDAC2P45880 294 aaPredicted RBP12.46□□□□□ -0.42
SF3B4-201ENST00000271628 TMEM177Q53S58 311 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 TGIF2LXQ8IUE1 241 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 FLYWCH2Q96CP2 140 aaKnown RBP12.46□□□□□ -0.42
SF3B4-201ENST00000271628 OR51M1Q9H341 326 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 VSIRQ9H7M9 311 aa12.46□□□□□ -0.42
SF3B4-201ENST00000271628 C15orf62A8K5M9 175 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 TGOLN2O43493 480 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 LIPFP07098 398 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 CXCL1P09341 107 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 S100PP25815 95 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 CDX1P47902 265 aaPredicted RBP12.45□□□□□ -0.42
SF3B4-201ENST00000271628 ZNF674Q2M3X9 581 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 VWC2Q2TAL6 325 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 ZNF343Q6P1L6 599 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 LY6G5BQ8NDX9 201 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 NABP2Q9BQ15 211 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 ENY2Q9NPA8 101 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 GSN-AS1Q9NRJ2 163 aa12.45□□□□□ -0.42
SF3B4-201ENST00000271628 DCHS2Q6V1P9 2916 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 IGHV2-26A0A0B4J1V2 119 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 UBE2L5PA0A1B0GUS4 154 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 A0A1W2PPR1 153 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 UPK2O00526 184 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 RND2P52198 227 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 VSTM2AQ8TAG5 236 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 HARBI1Q96MB7 349 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 GGACTQ9BVM4 153 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 PATZ1Q9HBE1 687 aaKnown RBP12.44□□□□□ -0.42
SF3B4-201ENST00000271628 URGCP-MRPS24S4R325 110 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 SPTBN1Q01082 2364 aaKnown RBP12.44□□□□□ -0.42
SF3B4-201ENST00000271628 MAP1LC3B2A6NCE7 125 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 A6NNC1 897 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 SRRM4A7MD48 611 aaKnown RBP12.44□□□□□ -0.42
SF3B4-201ENST00000271628 CLDN34H7C241 214 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 C19orf84I3L1E1 186 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 CLEC7AQ9BXN2 247 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 MAP1LC3BQ9GZQ8 125 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 UBTD1Q9HAC8 227 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 SDF2L1Q9HCN8 221 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 SLC39A9Q9NUM3 307 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 OR51B2Q9Y5P1 312 aa12.44□□□□□ -0.42
SF3B4-201ENST00000271628 CYB5BO43169 146 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 NDUFS6O75380 124 aaKnown RBP12.43□□□□□ -0.42
SF3B4-201ENST00000271628 KBTBD11O94819 623 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 GOSR1O95249 250 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 IGLV1-47P01700 117 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 MBP02144 154 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 REG1BP48304 166 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 BEND2Q8NDZ0 799 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 OR5B3Q8NH48 314 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 OR4A5Q8NH83 315 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 CTDSP1Q9GZU7 261 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 DOK5Q9P104 306 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 WASHC3Q9Y3C0 194 aa12.43□□□□□ -0.42
SF3B4-201ENST00000271628 TGIF2-C20orf24A0A0A6YYL0 155 aa12.42□□□□□ -0.42
SF3B4-201ENST00000271628 SAA1P0DJI8 122 aaPredicted RBP12.42□□□□□ -0.42
SF3B4-201ENST00000271628 FGF8P55075 233 aaPredicted RBP12.42□□□□□ -0.42
SF3B4-201ENST00000271628 HLA-DRB5Q30154 266 aa12.42□□□□□ -0.42
SF3B4-201ENST00000271628 SSX7Q7RTT5 188 aa12.42□□□□□ -0.42
SF3B4-201ENST00000271628 C17orf112F2Z3M2 114 aa12.42□□□□□ -0.42
SF3B4-201ENST00000271628 CDKN1AP38936 164 aa12.42□□□□□ -0.42
SF3B4-201ENST00000271628 ATP5IP56385 69 aaPredicted RBP12.42□□□□□ -0.42
SF3B4-201ENST00000271628 PRCDQ00LT1 54 aa12.42□□□□□ -0.42
SF3B4-201ENST00000271628 RPP25LQ8N5L8 163 aaKnown RBP12.42□□□□□ -0.42
SF3B4-201ENST00000271628 SSBP3Q9BWW4 388 aaPredicted RBP12.42□□□□□ -0.42
SF3B4-201ENST00000271628 AMMECR1Q9Y4X0 333 aaPredicted RBP12.42□□□□□ -0.42
SF3B4-201ENST00000271628 FGF7P21781 194 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 USF1P22415 310 aaPredicted RBP12.41□□□□□ -0.42
SF3B4-201ENST00000271628 CD1BP29016 333 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 GPR6P46095 362 aaPredicted RBP12.41□□□□□ -0.42
SF3B4-201ENST00000271628 EFNA4P52798 201 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 NDUFA6P56556 154 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 RPS16P62249 146 aaKnown RBP12.41□□□□□ -0.42
SF3B4-201ENST00000271628 DIAPH2-AS1Q14236 149 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 ZNF709Q8N972 641 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 FAM210BQ96KR6 192 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 PLEKHA3Q9HB20 300 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 TET2Q6N021 2002 aaPredicted RBP12.41□□□□□ -0.42
SF3B4-201ENST00000271628 MALRD1Q5VYJ5 2156 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 TRBV24-1A0A075B6N3 115 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 SEC14L6B5MCN3 397 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 BUB1B-PAK6H3BSN5 160 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 RRHO14718 337 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 SOX15O60248 233 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BKO60814 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 MPDU1O75352 247 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 OPN1MWP04001 364 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BJP06899 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 OPN1MW2P0DN77 364 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 OPN1MW3P0DN78 364 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 MDKP21741 143 aaPredicted RBP12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BOP23527 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 HIST1H2BBP33778 126 aa12.41□□□□□ -0.42
SF3B4-201ENST00000271628 LGALS7P47929 136 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms