RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 HAX1O00165 279 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 CEACAM1P13688 526 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 PSMG4Q5JS54 123 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 Q6AWC8 147 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 BIVMQ86UB2 503 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 ZNF414Q96IQ9 312 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 AKIRIN1Q9H9L7 192 aaPredicted RBP11.44□□□□□ -0.58
SF3A1-201ENST00000215793 PIKFYVEQ9Y2I7 2098 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 CACNA1DQ01668 2161 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 DPRXA6NFQ7 191 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 PEX7O00628 323 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 CGAP01215 116 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 IGFBP2P18065 325 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 TMEM136Q6ZRR5 245 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 FAM131CQ96AQ9 280 aa11.44□□□□□ -0.58
SF3A1-201ENST00000215793 TRAV24A0A0B4J272 114 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 A0A1B0GUT8 65 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 TBR1Q16650 682 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 TEX45Q8NA69 505 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 OR52E5Q8NH55 327 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 MRPL13Q9BYD1 178 aaKnown RBP11.43□□□□□ -0.58
SF3A1-201ENST00000215793 AICDAQ9GZX7 198 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 A0A1B0GW15 77 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 SRP19P09132 144 aaKnown RBP11.43□□□□□ -0.58
SF3A1-201ENST00000215793 VWCEQ96DN2 955 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 KCNS1Q96KK3 526 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 FOXA3P55318 350 aaPredicted RBP11.43□□□□□ -0.58
SF3A1-201ENST00000215793 PARD6GQ9BYG4 376 aaPredicted RBP11.43□□□□□ -0.58
SF3A1-201ENST00000215793 SCN10AQ9Y5Y9 1956 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 TRAV9-1A0A075B6T8 112 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 PQLC2LA1A4F0 135 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 FAM209BQ5JX69 171 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 LRTM2Q8N967 370 aa11.43□□□□□ -0.58
SF3A1-201ENST00000215793 SDK2Q58EX2 2172 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 TNS1Q9HBL0 1735 aaKnown RBP11.42□□□□□ -0.58
SF3A1-201ENST00000215793 IGHV3OR16-13A0A075B7E8 117 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 IGHV3-74A0A0B4J1X5 117 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 C17orf100A8MU93 164 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 ASIPP42127 132 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 CIARTQ8N365 385 aaPredicted RBP11.42□□□□□ -0.58
SF3A1-201ENST00000215793 GTF3AQ92664 365 aaKnown RBP11.42□□□□□ -0.58
SF3A1-201ENST00000215793 MDC1Q14676 2089 aaKnown RBP11.42□□□□□ -0.58
SF3A1-201ENST00000215793 TRBV6-7A0A0A0MS04 114 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 IGKV1D-33P01593 117 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 IGKV1-33P01594 117 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 IGHV1-2P23083 117 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 BSPH1Q075Z2 132 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 PRELID3AQ96N28 172 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 PRDM6Q9NQX0 595 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 LOC102723996A0A087X1L8 192 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 A1L4Q6 167 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 ATP5LO75964 103 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 WDR82Q6UXN9 313 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 NUP37Q8NFH4 326 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 FOXA2Q9Y261 457 aaPredicted RBP11.42□□□□□ -0.58
SF3A1-201ENST00000215793 NPFFO15130 113 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 SUMO2P61956 95 aaKnown RBP11.42□□□□□ -0.58
SF3A1-201ENST00000215793 RSPO4Q2I0M5 234 aaPredicted RBP11.42□□□□□ -0.58
SF3A1-201ENST00000215793 WDYHV1Q96HA8 205 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 F11RQ9Y624 299 aaKnown RBP11.42□□□□□ -0.58
SF3A1-201ENST00000215793 HEATR5BQ9P2D3 2071 aa11.42□□□□□ -0.58
SF3A1-201ENST00000215793 SAMD13Q5VXD3 122 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 TMEM144Q7Z5S9 345 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 PPP1R27Q86WC6 154 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 ARL6IP6Q8N6S5 226 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 WBP1Q96G27 269 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 FMC1Q96HJ9 113 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 CBLN4Q9NTU7 201 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 IGHV3OR16-10A0A075B7F0 116 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 RNF222A6NCQ9 220 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 PF4P02776 101 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 TFF3Q07654 80 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 ARPC1AQ92747 370 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 A0A087WWC5 75 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 A8MXK9 166 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 C9JCJ5 164 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 FAM201AQ5SY85 155 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 ZNF525Q8N782 197 aa11.41□□□□□ -0.58
SF3A1-201ENST00000215793 ZNF837Q96EG3 531 aaPredicted RBP11.41□□□□□ -0.58
SF3A1-201ENST00000215793 COL11A2P13942 1736 aaPredicted RBP11.41□□□□□ -0.58
SF3A1-201ENST00000215793 PTPRFP10586 1907 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 A0A0G2JMM0 328 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 A0A1W2PPB8 328 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 A0A1W2PRS3 328 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 KIR3DP1A8MWS1 328 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 M0R381 172 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 DNAL4O96015 105 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 IGKV3-20P01619 116 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 LINC00271P0C7V0 271 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 REC114Q7Z4M0 266 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 ATOH7Q8N100 152 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 ABHD17AQ96GS6 310 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 MRPL20Q9BYC9 149 aaKnown RBP11.4□□□□□ -0.58
SF3A1-201ENST00000215793 TNFRSF18Q9Y5U5 241 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 MYOFQ9NZM1 2061 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 IGLV3-32A0A0A0MS00 114 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 YPEL1O60688 119 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 UMODP07911 640 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 LTBRP36941 435 aa11.4□□□□□ -0.58
SF3A1-201ENST00000215793 WFIKKN1Q96NZ8 548 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms