RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 hCG_1809904A0A1W2PP81 198 aa12.77□□□□□ -0.36
CLN3-251ENST00000636853 A0A1W2PR64 198 aa12.77□□□□□ -0.36
CLN3-251ENST00000636853 A0A1W2PRV1 198 aa12.77□□□□□ -0.36
CLN3-251ENST00000636853 SRRM4A7MD48 611 aaKnown RBP12.77□□□□□ -0.36
CLN3-251ENST00000636853 IGKV1D-33P01593 117 aa12.77□□□□□ -0.36
CLN3-251ENST00000636853 IGKV1-33P01594 117 aa12.77□□□□□ -0.36
CLN3-251ENST00000636853 FOSL1P15407 271 aa12.77□□□□□ -0.36
CLN3-251ENST00000636853 ACSM6Q6P461 480 aa12.77□□□□□ -0.36
CLN3-251ENST00000636853 ZNF429Q86V71 674 aa12.77□□□□□ -0.36
CLN3-251ENST00000636853 UNKLQ9H9P5 680 aaKnown RBP12.77□□□□□ -0.36
CLN3-251ENST00000636853 DLL1O00548 723 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 HRASP01112 189 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 ICAM4Q14773 271 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 RTL8BQ17RB0 113 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 VWC2Q2TAL6 325 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 PDLIM3Q53GG5 364 aaPredicted RBP12.77□□□□□ -0.37
CLN3-251ENST00000636853 ZNF787Q6DD87 383 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 FAM24BQ8N5W8 94 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 CLDND2Q8NHS1 167 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 ISOC2Q96AB3 205 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 C20orf24Q9BUV8 137 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 GNG13Q9P2W3 67 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 TIMM9Q9Y5J7 89 aa12.77□□□□□ -0.37
CLN3-251ENST00000636853 TRAV1-1A0A0B4J248 108 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 CEBPGP53567 150 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 DLX6P56179 175 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 DIAPH2-AS1Q14236 149 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 CENPVQ7Z7K6 275 aaPredicted RBP12.76□□□□□ -0.37
CLN3-251ENST00000636853 TMEM14BQ9NUH8 114 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 FOXA2Q9Y261 457 aaPredicted RBP12.76□□□□□ -0.37
CLN3-251ENST00000636853 A0A087WWC5 75 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 SCAF4O95104 1147 aaKnown RBP12.76□□□□□ -0.37
CLN3-251ENST00000636853 POU2AF1Q16633 256 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 TMEM155Q4W5P6 130 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 RPP25LQ8N5L8 163 aaKnown RBP12.76□□□□□ -0.37
CLN3-251ENST00000636853 OR10X1Q8NGY0 326 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 TMEM170AQ8WVE7 144 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 MBD3L1Q8WWY6 194 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 TMEM204Q9BSN7 226 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 NPCDR1Q9BY65 106 aa12.76□□□□□ -0.37
CLN3-251ENST00000636853 J3QR06 171 aa12.75□□□□□ -0.37
CLN3-251ENST00000636853 LY6HO94772 140 aa12.75□□□□□ -0.37
CLN3-251ENST00000636853 OPN1MWP04001 364 aa12.75□□□□□ -0.37
CLN3-251ENST00000636853 OPN1MW2P0DN77 364 aa12.75□□□□□ -0.37
CLN3-251ENST00000636853 OPN1MW3P0DN78 364 aa12.75□□□□□ -0.37
CLN3-251ENST00000636853 HSPE1P61604 102 aaKnown RBP12.75□□□□□ -0.37
CLN3-251ENST00000636853 RPP30P78346 268 aaKnown RBP12.75□□□□□ -0.37
CLN3-251ENST00000636853 HINT2Q9BX68 163 aa12.75□□□□□ -0.37
CLN3-251ENST00000636853 TNCP24821 2201 aa12.75□□□□□ -0.37
CLN3-251ENST00000636853 ZFP92A6NM28 416 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 HMGB3O15347 200 aaKnown RBP12.74□□□□□ -0.37
CLN3-251ENST00000636853 SRP19P09132 144 aaKnown RBP12.74□□□□□ -0.37
CLN3-251ENST00000636853 CD1BP29016 333 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 DLX1P56177 255 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 SOHLH1Q5JUK2 328 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 ZNF506Q5JVG8 444 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 FFAR4Q5NUL3 377 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 OR51B2Q9Y5P1 312 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 DCHS2Q6V1P9 2916 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 SMCO3A2RU48 225 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 CXorf65A6NEN9 183 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 LY86O95711 162 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 MDKP21741 143 aaPredicted RBP12.74□□□□□ -0.37
CLN3-251ENST00000636853 PRB3Q04118 309 aaPredicted RBP12.74□□□□□ -0.37
CLN3-251ENST00000636853 ZNF709Q8N972 641 aa12.74□□□□□ -0.37
CLN3-251ENST00000636853 MAP1LC3B2A6NCE7 125 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 H0YJW9 148 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 UPK2O00526 184 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 OR2C1O95371 312 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 IGHV1-8P0DP01 117 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 C11orf42Q8N5U0 333 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 RAB39BQ96DA2 213 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 MAP1LC3BQ9GZQ8 125 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 SLC25A22Q9H936 323 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 SLC39A9Q9NUM3 307 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 MALRD1Q5VYJ5 2156 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 LOC102723971A0A1B0GUV8 181 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 A0A1W2PPE2 198 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 PRSS46E5RG02 174 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 APOA2P02652 100 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 IL6RP08887 468 aaPredicted RBP12.73□□□□□ -0.37
CLN3-251ENST00000636853 SAA1P0DJI8 122 aaPredicted RBP12.73□□□□□ -0.37
CLN3-251ENST00000636853 SFTPCP11686 197 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 S100A2P29034 98 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 KIAA0141Q14154 515 aaPredicted RBP12.73□□□□□ -0.37
CLN3-251ENST00000636853 CYB561D1Q8N8Q1 229 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 RALYQ9UKM9 306 aaKnown RBP12.73□□□□□ -0.37
CLN3-251ENST00000636853 WDR83OSQ9Y284 106 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 PUS1Q9Y606 427 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLN3-251ENST00000636853 HIVEP3Q5T1R4 2406 aa12.73□□□□□ -0.37
CLN3-251ENST00000636853 SEC14L6B5MCN3 397 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 HSPB1P04792 205 aaKnown RBP12.72□□□□□ -0.37
CLN3-251ENST00000636853 DEFA4P12838 97 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 PPOXP50336 477 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 ZNF841Q6ZN19 808 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 Q8N7P7 452 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 OR5AN1Q8NGI8 311 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 OR10G4Q8NGN3 311 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 OR10G9Q8NGN4 311 aa12.72□□□□□ -0.37
CLN3-251ENST00000636853 OR10G7Q8NGN6 311 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms