RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 CCRL2O00421 344 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 ADAP1O75689 374 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 APOMO95445 188 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 IL6P05231 212 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 HLA-DMBP28068 263 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 S100A7P31151 101 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 EIF2B2P49770 351 aaKnown RBP0.01□□□□□ -2.41
SCN1A-208ENST00000625916 RAB13P51153 203 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 RPS24P62847 133 aaKnown RBP0.01□□□□□ -2.41
SCN1A-208ENST00000625916 DMTNQ08495 405 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 SRSF6Q13247 344 aaKnown RBP0.01□□□□□ -2.41
SCN1A-208ENST00000625916 ZNHIT3Q15649 155 aaPredicted RBP0.01□□□□□ -2.41
SCN1A-208ENST00000625916 C4orf26Q17RF5 130 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 HLA-DRB5Q30154 266 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 TMEM251Q8N6I4 163 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 WFDC11Q8NEX6 87 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 OR1M1Q8NGA1 313 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 SLC37A2Q8TED4 501 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 ANKRD7Q92527 254 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 HES4Q9HCC6 221 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 C1orf109Q9NX04 203 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 TTC21AQ8NDW8 1320 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 RIMS2Q9UQ26 1411 aa0.01□□□□□ -2.41
SCN1A-208ENST00000625916 CLDN25C9JDP6 229 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 HYPMO75409 117 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 OR5F1O95221 314 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 IGHV3-7P01780 117 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 COL6A3P12111 3177 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 KDELR2P33947 212 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 LRPPRCP42704 1394 aaKnown RBP0□□□□□ -2.41
SCN1A-208ENST00000625916 LRRC26Q2I0M4 334 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 GREB1Q4ZG55 1949 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 GDF5OSQ5U4N7 250 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 PDPK2PQ6A1A2 396 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 UBL4BQ8N7F7 174 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 OR2T27Q8NH04 317 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 PATE1Q8WXA2 126 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 SIKE1Q9BRV8 207 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 OR8D2Q9GZM6 311 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 SLC22A4Q9H015 551 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 CXorf21Q9HAI6 301 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 GPR84Q9NQS5 396 aa0□□□□□ -2.41
SCN1A-208ENST00000625916 TNRC6BQ9UPQ9 1833 aaKnown RBP0□□□□□ -2.41
SCN1A-208ENST00000625916 LOC100506127A0A0U1RQW1 187 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 GGT3PA6NGU5 568 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 I3L521 148 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 FADS1O60427 444 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 NOS1APO75052 506 aaPredicted RBP-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 IVLP07476 585 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 OR4D2P58180 307 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 SLAMF1Q13291 335 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 Q3ZCU0 254 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 SBSNQ6UWP8 590 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 CRLF3Q8IUI8 442 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 RIBC1Q8N443 379 aaPredicted RBP-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 OR7G1Q8NGA0 311 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 HAVCR2Q8TDQ0 301 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 C11orf40Q8WZ69 217 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 BBS2Q9BXC9 721 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 WDR54Q9H977 334 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 NIT2Q9NQR4 276 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 RSL24D1Q9UHA3 163 aaKnown RBP-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 ANAPC10Q9UM13 185 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 FUT9Q9Y231 359 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 COQ4Q9Y3A0 265 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 STAB1Q9NY15 2570 aa-0.01□□□□□ -2.41
SCN1A-208ENST00000625916 KCPQ6ZWJ8 1503 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 ALPK2Q86TB3 2170 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 EML5Q05BV3 1969 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 EXPH5Q8NEV8 1989 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 FTCDNL1E5RQL4 147 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 NCR3O14931 201 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 YEATS4O95619 227 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 RPS4Y1P22090 263 aaKnown RBP-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 DDTP30046 118 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 POLR2GP62487 172 aaKnown RBP eCLIP-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 SUPT4H1P63272 117 aaKnown RBP-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 MGAT3Q09327 533 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 C5orf46Q6UWT4 87 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 LCN15Q6UWW0 184 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 COPS6Q7L5N1 327 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 ZNF550Q7Z398 422 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 OOSP2Q86WS3 158 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 OR5L1Q8NGL2 311 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 ZNF418Q8TF45 676 aaPredicted RBP-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 SLC50A1Q9BRV3 221 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 TMEM70Q9BUB7 260 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 MS4A6AQ9H2W1 248 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 AGPAT3Q9NRZ7 376 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 CISHQ9NSE2 258 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 EURLQ9NYK6 297 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 AK3Q9UIJ7 227 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 TP53TG1Q9Y2A0 90 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 RNF213Q63HN8 5207 aa-0.02□□□□□ -2.41
SCN1A-208ENST00000625916 STRCQ7RTU9 1775 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 IGHV1-69-2A0A0G2JMI3 117 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 C2orf70A6NJV1 201 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 F8VZ95 297 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 GOLGA6L19H0YKK7 550 aa-0.03□□□□□ -2.41
SCN1A-208ENST00000625916 M0R2N4 97 aa-0.03□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms