RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 GNRHRP30968 328 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 TMEM69Q5SWH9 247 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 DHRS11Q6UWP2 260 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 ZNF818PQ6ZRF7 136 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 SSX9Q7RTT3 188 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 LYSMD2Q8IV50 215 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 TTC9CQ8N5M4 171 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 NECAP1Q8NC96 275 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 OR2A7Q96R45 310 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 SRD5A3Q9H8P0 318 aa9.42□□□□□ -0.9
TRIM28-212ENST00000597995 C2orf70A6NJV1 201 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 LGALS9O00182 355 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 SULT1C2O00338 296 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 ACTL6BO94805 426 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 PMP2P02689 132 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 FOLR2P14207 255 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 SLC25A42Q86VD7 318 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 TMEM17Q86X19 198 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 SPAG16Q8N0X2 631 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 ZBTB34Q8NCN2 500 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 IFT46Q9NQC8 304 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 EHFQ9NZC4 300 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 COMMD3Q9UBI1 195 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 DMRT1Q9Y5R6 373 aa9.41□□□□□ -0.9
TRIM28-212ENST00000597995 TRAV3A0A0B4J244 114 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 GGCTO75223 188 aaKnown RBP9.4□□□□□ -0.9
TRIM28-212ENST00000597995 ZNF735P0CB33 412 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 AREGP15514 252 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 ELK1P19419 428 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 RPL27AP46776 148 aaKnown RBP9.4□□□□□ -0.9
TRIM28-212ENST00000597995 CTF1Q16619 201 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 GUCA2BQ16661 112 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 OR4A47Q6IF82 309 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 GPHB5Q86YW7 130 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 VSTM2AQ8TAG5 236 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 GPX8Q8TED1 209 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 FANCD2OSQ96PS1 177 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 BET1LQ9NYM9 111 aa9.4□□□□□ -0.9
TRIM28-212ENST00000597995 ALMS1Q8TCU4 4167 aa9.4□□□□□ -0.91
TRIM28-212ENST00000597995 NPIPB5A8MRT5 1133 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 RBFOX2O43251 390 aaKnown RBP eCLIP9.39□□□□□ -0.91
TRIM28-212ENST00000597995 HPGDSO60760 199 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 OR2J3O76001 311 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 HRASP01112 189 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 APOA1P02647 267 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 CRYGCP07315 174 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 CBLN1P23435 193 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 PRSS3P35030 304 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 MAS1LP35410 378 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 POU2AF1Q16633 256 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 KLK9Q2XQG4 91 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 C15orf32Q32M92 178 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 SLC16A13Q7RTY0 426 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 OR51H1Q8NH63 302 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 LINC00476Q8WZB0 136 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 MOB3AQ96BX8 217 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 FYTTD1Q96QD9 318 aaKnown RBP9.39□□□□□ -0.91
TRIM28-212ENST00000597995 ZNF2Q9BSG1 426 aaPredicted RBP9.39□□□□□ -0.91
TRIM28-212ENST00000597995 FXYD6Q9H0Q3 95 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 WFDC10AQ9H1F0 79 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 SLC2A9Q9NRM0 540 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 KLK9Q9UKQ9 250 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 ZNF257Q9Y2Q1 563 aa9.39□□□□□ -0.91
TRIM28-212ENST00000597995 UPK2O00526 184 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 PGLYRP1O75594 196 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-212ENST00000597995 S1PR2O95136 353 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 GABARAPO95166 117 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 NDUFB8O95169 186 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 OR2C1O95371 312 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 HPRT1P00492 218 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 CTRB1P17538 263 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 HLA-GP17693 338 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 HLA-DMAP28067 261 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 HRH1P35367 487 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 TAS2R31P59538 309 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 RPL8P62917 257 aaKnown RBP9.38□□□□□ -0.91
TRIM28-212ENST00000597995 ANKRD55Q3KP44 614 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 CTRB2Q6GPI1 263 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 OR5H2Q8NGV7 314 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 WDR89Q96FK6 387 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-212ENST00000597995 CMTM3Q96MX0 182 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 OVOL2Q9BRP0 275 aa9.38□□□□□ -0.91
TRIM28-212ENST00000597995 PPP5D1E7EU14 171 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 HLA-AP01891 365 aaKnown RBP9.37□□□□□ -0.91
TRIM28-212ENST00000597995 REG1AP05451 166 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 RPA2P15927 270 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 NQO2P16083 231 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 PSMB6P28072 239 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 TAS2R46P59540 309 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 OR2B8PP59922 312 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 HERV-K104P61576 105 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 CATR1Q13166 79 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 ZNF585BQ52M93 769 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 AADACL3Q5VUY0 350 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 ZNF57Q68EA5 555 aaPredicted RBP9.37□□□□□ -0.91
TRIM28-212ENST00000597995 SNX29P2Q8IUI4 249 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 OR4A5Q8NH83 315 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 GGTLC1Q9BX51 225 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 PLEKHA2Q9HB19 425 aa9.37□□□□□ -0.91
TRIM28-212ENST00000597995 FBXL7Q9UJT9 491 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms