RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RNF126Q9BV68 326 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 MAGT1Q9H0U3 335 aa12.2□□□□□ -0.46
TRIM28-209ENST00000597423 CSMD2Q7Z408 3487 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 TRAV14DV4A0A0A6YYC5 116 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 TRAV3A0A0B4J244 114 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 M0QZK8 103 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 SSSCA1O60232 199 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 CNIH1O95406 144 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 LYL1P12980 280 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 P2RY1P47900 373 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 KRTAP1-1Q07627 177 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 C5orf64Q2M2E5 130 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 RBMS3Q6XE24 437 aaKnown RBP12.19□□□□□ -0.46
TRIM28-209ENST00000597423 SMIM8Q96KF7 97 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 RBM14Q96PK6 669 aaKnown RBP12.19□□□□□ -0.46
TRIM28-209ENST00000597423 TMUB1Q9BVT8 246 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 SLC25A31Q9H0C2 315 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 FBXL15Q9H469 300 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 RBKSQ9H477 322 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 ZNF430Q9H8G1 570 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-209ENST00000597423 ZC4H2Q9NQZ6 224 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 MBD2Q9UBB5 411 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 RCL1Q9Y2P8 373 aaKnown RBP12.19□□□□□ -0.46
TRIM28-209ENST00000597423 WSB1Q9Y6I7 421 aa12.19□□□□□ -0.46
TRIM28-209ENST00000597423 TEX50A0A1B0GTY4 177 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 A0A1W2PN81 502 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 H3BUX3 64 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 OR2F2O95006 317 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 NXPH3O95157 252 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 CNTFRP26992 372 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 CHRNA7P36544 502 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 ATP5IP56385 69 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-209ENST00000597423 Q6YL49 198 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 HSD17B13Q7Z5P4 300 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-209ENST00000597423 BCL6BQ8N143 479 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-209ENST00000597423 DTD1Q8TEA8 209 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 HINT2Q9BX68 163 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 PRDM13Q9H4Q3 707 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 PLEKHA3Q9HB20 300 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 HEYLQ9NQ87 328 aaPredicted RBP12.18□□□□□ -0.46
TRIM28-209ENST00000597423 PLSCR3Q9NRY6 295 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 TCF19Q9Y242 345 aa12.18□□□□□ -0.46
TRIM28-209ENST00000597423 ITPR3Q14573 2671 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 A0A0D9SG52 128 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 FGF16O43320 207 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 SCAF4O95104 1147 aaKnown RBP12.17□□□□□ -0.46
TRIM28-209ENST00000597423 HOXA1P49639 335 aaPredicted RBP12.17□□□□□ -0.46
TRIM28-209ENST00000597423 ERHP84090 104 aaKnown RBP12.17□□□□□ -0.46
TRIM28-209ENST00000597423 PRCDQ00LT1 54 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 TNXAQ16473 311 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 CLEC9AQ6UXN8 241 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 ZNF562Q6V9R5 426 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 ACOT7LQ6ZUV0 252 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 PIFOQ8TCI5 191 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 SSMEM1Q8WWF3 244 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 SRSF8Q9BRL6 282 aaKnown RBP12.17□□□□□ -0.46
TRIM28-209ENST00000597423 SLC25A33Q9BSK2 321 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 MFFQ9GZY8 342 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 PSENENQ9NZ42 101 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 OR5AC2Q9NZP5 309 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 CDC42EP3Q9UKI2 254 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 MOB4Q9Y3A3 225 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 ABCA1O95477 2261 aa12.17□□□□□ -0.46
TRIM28-209ENST00000597423 A6NDX4 124 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 G3V3Q6 166 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 H0YIZ8 118 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 BOLA2-SMG1P6H3BVE0 249 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 ARPC5O15511 151 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 TSC22D2O75157 780 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 LY6G6DO95868 133 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 IER3P46695 156 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 RPL27AP46776 148 aaKnown RBP12.16□□□□□ -0.46
TRIM28-209ENST00000597423 COMPP49747 757 aaPredicted RBP12.16□□□□□ -0.46
TRIM28-209ENST00000597423 CAV2P51636 162 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 GNB1P62873 340 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 OR2F1Q13607 317 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 OR2C3Q8N628 320 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 OR11H4Q8NGC9 324 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 C22orf15Q8WYQ4 148 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 RBMXL1Q96E39 390 aaKnown RBP12.16□□□□□ -0.46
TRIM28-209ENST00000597423 NDUFA4L2Q9NRX3 87 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 TNFSF18Q9UNG2 199 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 SOX21Q9Y651 276 aaPredicted RBP12.16□□□□□ -0.46
TRIM28-209ENST00000597423 U3KQ87 197 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 VPS13CQ709C8 3753 aa12.16□□□□□ -0.46
TRIM28-209ENST00000597423 IAPPP10997 89 aa12.15□□□□□ -0.46
TRIM28-209ENST00000597423 RPL12P30050 165 aaKnown RBP12.15□□□□□ -0.46
TRIM28-209ENST00000597423 SNCAP37840 140 aa12.15□□□□□ -0.46
TRIM28-209ENST00000597423 SUB1P53999 127 aaKnown RBP eCLIP12.15□□□□□ -0.466e-7■■■□□ 18.1
TRIM28-209ENST00000597423 PJVKQ0ZLH3 352 aa12.15□□□□□ -0.46
TRIM28-209ENST00000597423 FXYD3Q14802 87 aa12.15□□□□□ -0.46
TRIM28-209ENST00000597423 TMEM86BQ8N661 226 aa12.15□□□□□ -0.46
TRIM28-209ENST00000597423 Q8N9W7 124 aa12.15□□□□□ -0.46
TRIM28-209ENST00000597423 LYRM2Q9NU23 88 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-209ENST00000597423 STRAPQ9Y3F4 350 aaKnown RBP12.15□□□□□ -0.46
TRIM28-209ENST00000597423 FLNBO75369 2602 aaKnown RBP12.14□□□□□ -0.47
TRIM28-209ENST00000597423 INS-IGF2F8WCM5 200 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 FCN1O00602 326 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 CA2P00918 260 aa12.14□□□□□ -0.47
TRIM28-209ENST00000597423 IFNA10P01566 189 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms