RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 VN1R17PQ8TDU5 208 aa9.29□□□□□ -0.92
CCDC40-208ENST00000572270 TM2D1Q9BX74 207 aa9.29□□□□□ -0.92
CCDC40-208ENST00000572270 PRELID3BQ9Y3B1 194 aa9.29□□□□□ -0.92
CCDC40-208ENST00000572270 IGHV3-49A0A0A0MS15 119 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 CD5P06127 495 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 EIF4EP06730 217 aaKnown RBP9.28□□□□□ -0.92
CCDC40-208ENST00000572270 CD3GP09693 182 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 HTN3P15516 51 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 OR2B11Q5JQS5 317 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 TMPRSS11AQ6ZMR5 421 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 KCTD9Q7L273 389 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 TCF24Q7RTU0 167 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 OR52I1Q8NGK6 324 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 SLC29A1Q99808 456 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 CMSS1Q9BQ75 279 aaKnown RBP9.28□□□□□ -0.92
CCDC40-208ENST00000572270 ARL2BPQ9Y2Y0 163 aa9.28□□□□□ -0.92
CCDC40-208ENST00000572270 TRBV5-7A0A0A0MS05 114 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 OGG1O15527 345 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 FABP7O15540 132 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 LIMS3P0CW19 117 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 LIMS4P0CW20 117 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 CALB2P22676 271 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 SERTAD4-AS1Q5TG53 156 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 TTC23Q5W5X9 447 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 FAM90A2PQ658T7 463 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 UBAC2Q8NBM4 344 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 GINS4Q9BRT9 223 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 AMBNQ9NP70 447 aa9.27□□□□□ -0.93
CCDC40-208ENST00000572270 RAB27BO00194 218 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 YIF1AO95070 293 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 CELP19835 753 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 RPL11P62913 178 aaKnown RBP9.26□□□□□ -0.93
CCDC40-208ENST00000572270 RPL8P62917 257 aaKnown RBP9.26□□□□□ -0.93
CCDC40-208ENST00000572270 RELQ04864 619 aaPredicted RBP9.26□□□□□ -0.93
CCDC40-208ENST00000572270 IGSF11Q5DX21 431 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 PUSL1Q8N0Z8 303 aaKnown RBP9.26□□□□□ -0.93
CCDC40-208ENST00000572270 C15orf53Q8NAA6 179 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 OR4S2Q8NH73 311 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 Q96MT0 163 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 ATP6V0BQ99437 205 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 CABLES2Q9BTV7 478 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 MS4A6AQ9H2W1 248 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 ORC6Q9Y5N6 252 aa9.26□□□□□ -0.93
CCDC40-208ENST00000572270 IGHV3OR16-13A0A075B7E8 117 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 TRBV6-7A0A0A0MS04 114 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 TRAV14DV4A0A0A6YYC5 116 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 A0A0A6YYD4 124 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 IGHV3-74A0A0B4J1X5 117 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 TRAV2A0A0B4J234 112 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 TEX48A0A1B0GUV7 120 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 TMEM189A5PLL7 270 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 NUPL2O15504 423 aaKnown RBP9.25□□□□□ -0.93
CCDC40-208ENST00000572270 SOCS1O15524 211 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 HLA-GP17693 338 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 EMP1P54849 157 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 RPS11P62280 158 aaKnown RBP eCLIP9.25□□□□□ -0.93
CCDC40-208ENST00000572270 MRPS15P82914 257 aaKnown RBP9.25□□□□□ -0.93
CCDC40-208ENST00000572270 UNC119Q13432 240 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 Q56UQ5 140 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 HSP90B2PQ58FF3 399 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 TMEM88Q6PEY1 159 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 AMIGO2Q86SJ2 522 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 FAM24BQ8N5W8 94 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 CSNK1G2-AS1Q8NCQ2 148 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 URM1Q9BTM9 101 aaKnown RBP9.25□□□□□ -0.93
CCDC40-208ENST00000572270 KCNK15Q9H427 330 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 C21orf62Q9NYP8 219 aa9.25□□□□□ -0.93
CCDC40-208ENST00000572270 ST8SIA3O43173 380 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 GNB3P16520 340 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 XGP55808 180 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 SSX1Q16384 188 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 UBE2UQ5VVX9 321 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 SLC25A24Q6NUK1 477 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 DUSP18Q8NEJ0 188 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 ZNRF2Q8NHG8 242 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 ZNF414Q96IQ9 312 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 DERL3Q96Q80 235 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 NIPSNAP3BQ9BS92 247 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 C1QTNF4Q9BXJ3 329 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 BABAM2Q9NXR7 383 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 MDFICQ9P1T7 246 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 RABAC1Q9UI14 185 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 HSF4Q9ULV5 492 aa9.24□□□□□ -0.93
CCDC40-208ENST00000572270 IGHV3-21A0A0B4J1V1 117 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 IGLC7A0M8Q6 106 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 CGB1A6NKQ9 187 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 KNCNA6PVL3 124 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 FAM229AH3BQW9 127 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 DIRAS3O95661 229 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 HRASP01112 189 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 CD36P16671 472 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 BTF3P20290 206 aaKnown RBP9.23□□□□□ -0.93
CCDC40-208ENST00000572270 MFSD4AQ8N468 514 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 ZFP41Q8N8Y5 198 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 DGCR14Q96DF8 476 aaKnown RBP9.23□□□□□ -0.93
CCDC40-208ENST00000572270 ZNF503Q96F45 646 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 OR10C1Q96KK4 312 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 PGLYRP3Q96LB9 341 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 LPAR5Q9H1C0 372 aa9.23□□□□□ -0.93
CCDC40-208ENST00000572270 OAZ3Q9UMX2 235 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms