RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 C7orf66A4D0T2 115 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 C15orf61A6NNL5 157 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 ADARB2-AS1A8MUL3 147 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 MPTX1A8MV57 137 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 PITX3O75364 302 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 ADAP1O75689 374 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 IGLV1-40P01703 118 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 HLA-AP01891 365 aaKnown RBP7.27□□□□□ -1.25
VPS35-211ENST00000569950 IL5P05113 134 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 SERPINE2P07093 398 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 HLA-GP17693 338 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 VAMP1P23763 118 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 S100GP29377 79 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 DEFA1P59665 94 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 DEFA3P59666 94 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 RPL8P62917 257 aaKnown RBP7.27□□□□□ -1.25
VPS35-211ENST00000569950 CBX3Q13185 183 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 FXYD3Q14802 87 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 KLK9Q2XQG4 91 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 C9orf152Q5JTZ5 239 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 C11orf87Q6NUJ2 197 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 C19orf35Q6ZS72 473 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 FOXRED2Q8IWF2 684 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 MMD2Q8IY49 270 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 RNF152Q8N8N0 203 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 OR4F5Q8NH21 305 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 OR4A5Q8NH83 315 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 SGMS2Q8NHU3 365 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 ENKURQ8TC29 256 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 MYOZ3Q8TDC0 251 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 SRSF12Q8WXF0 261 aaKnown RBP7.27□□□□□ -1.25
VPS35-211ENST00000569950 ARPC1AQ92747 370 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 LSM10Q969L4 123 aaKnown RBP7.27□□□□□ -1.25
VPS35-211ENST00000569950 SHPKQ9UHJ6 478 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 KLK9Q9UKQ9 250 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 FOXA2Q9Y261 457 aaPredicted RBP7.27□□□□□ -1.25
VPS35-211ENST00000569950 RNF114Q9Y508 228 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 DMRT1Q9Y5R6 373 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 NBEAL1Q6ZS30 2694 aa7.27□□□□□ -1.25
VPS35-211ENST00000569950 INMT-MINDY4F8WBC2 141 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 AP4M1O00189 453 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 KCNAB3O43448 404 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 CRYBA1P05813 215 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 MAS1LP35410 378 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 VDAC2P45880 294 aaPredicted RBP7.26□□□□□ -1.25
VPS35-211ENST00000569950 WT1-ASQ06250 92 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 TNXAQ16473 311 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 TRIM16LQ309B1 348 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 PDLIM3Q53GG5 364 aaPredicted RBP7.26□□□□□ -1.25
VPS35-211ENST00000569950 LCNL1Q6ZST4 164 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 ZNF429Q86V71 674 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 KLHDC1Q8N7A1 406 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 LFNGQ8NES3 379 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 DMBX1Q8NFW5 382 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 OR10W1Q8NGF6 305 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 OR2T6Q8NHC8 308 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 VSTM2AQ8TAG5 236 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 ZNF431Q8TF32 576 aaPredicted RBP7.26□□□□□ -1.25
VPS35-211ENST00000569950 CASTOR1Q8WTX7 329 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 TMEM158Q8WZ71 300 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 QTRT1Q9BXR0 403 aaKnown RBP7.26□□□□□ -1.25
VPS35-211ENST00000569950 PARP11Q9NR21 331 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 NDUFA4L2Q9NRX3 87 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 KCNIP3Q9Y2W7 256 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 WSB1Q9Y6I7 421 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 MGAM2Q2M2H8 2515 aa7.26□□□□□ -1.25
VPS35-211ENST00000569950 TRAV41A0A0B4J266 112 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 DUXBA0A1W2PPF3 345 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 HMX3A6NHT5 357 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 MSGN1A6NI15 193 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 ST8SIA3O43173 380 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 IGHG4P01861 327 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 OPN1MWP04001 364 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 APELAP0DMC3 54 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 OPN1MW2P0DN77 364 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 OPN1MW3P0DN78 364 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 AREGP15514 252 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 VDAC1P21796 283 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 PSMB8P28062 276 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 MFAP2P55001 183 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 GNB1P62873 340 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 FOXL1Q12952 345 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 IL15RAQ13261 267 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 PLGLAQ15195 96 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 C4orf46Q504U0 113 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 AKIRIN2Q53H80 203 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 GGNBP1Q5YKI7 109 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 ZNF329Q86UD4 541 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 FAM219AQ8IW50 185 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 LGI3Q8N145 548 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 GRPEL2Q8TAA5 225 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 CHPT1Q8WUD6 406 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 WDR89Q96FK6 387 aaPredicted RBP7.25□□□□□ -1.25
VPS35-211ENST00000569950 OR10C1Q96KK4 312 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 CITED1Q99966 193 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 KLK15Q9H2R5 256 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 COA4Q9NYJ1 87 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 CACNG5Q9UF02 275 aa7.25□□□□□ -1.25
VPS35-211ENST00000569950 A0A1B0GUS0 222 aa7.24□□□□□ -1.25
VPS35-211ENST00000569950 CRYGCP07315 174 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms