RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 GABARAPO95166 117 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 IGHV3-23P01764 117 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 AREGP15514 252 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 CBLN1P23435 193 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 PSMB6P28072 239 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 ARL3P36405 182 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 GNG2P59768 71 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 KLK9Q2XQG4 91 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 CLEC19AQ6UXS0 136 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 ZNF66Q6ZN08 573 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 CROCCP3Q8IVE0 287 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 MFSD4AQ8N468 514 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 TAS2R8Q9NYW2 309 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 ANXA10Q9UJ72 324 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 KLK9Q9UKQ9 250 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 S4R3C0 116 aa11.21□□□□□ -0.61
CLN3-236ENST00000568558 TMEM213A2RRL7 107 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 A8MWP6 167 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 SCGNO76038 276 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 DHFRP00374 187 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 CTRB1P17538 263 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 CTRB2Q6GPI1 263 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 SLC16A13Q7RTY0 426 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 TMEM61Q8N0U2 210 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 EEF1AKMT3Q96AZ1 226 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 GPHA2Q96T91 129 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 SELENOKQ9Y6D0 94 aa11.2□□□□□ -0.62
CLN3-236ENST00000568558 TMEM127O75204 238 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 HRASP01112 189 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 MYOD1P15172 320 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 HIST1H1BP16401 226 aaKnown RBP11.19□□□□□ -0.62
CLN3-236ENST00000568558 RPL8P62917 257 aaKnown RBP11.19□□□□□ -0.62
CLN3-236ENST00000568558 FAM106AQ4KMX7 169 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 UBE2NLQ5JXB2 153 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 ZNF57Q68EA5 555 aaPredicted RBP11.19□□□□□ -0.62
CLN3-236ENST00000568558 SSX9Q7RTT3 188 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 GVQW1Q8N7I0 195 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 SAMD12Q8N8I0 201 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 AUNIPQ9H7T9 357 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 MLXQ9UH92 298 aa11.19□□□□□ -0.62
CLN3-236ENST00000568558 IGLV11-55A0A075B6I3 123 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 A0A0A6YYH2 397 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 ZNF320A2RRD8 509 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 A6NJ64 397 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 CGB1A6NKQ9 187 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 EIF4EP06730 217 aaKnown RBP11.18□□□□□ -0.62
CLN3-236ENST00000568558 FCER2P06734 321 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 HLA-GP17693 338 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 MSMO1Q15800 293 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 OR4A47Q6IF82 309 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 GPR141Q7Z602 305 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 UXS1Q8NBZ7 420 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 OR52B4Q8NGK2 314 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 DIABLOQ9NR28 239 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 CCL28Q9NRJ3 127 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 BET1LQ9NYM9 111 aa11.18□□□□□ -0.62
CLN3-236ENST00000568558 TRBV7-1A0A0A6YYK4 115 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 MEIS3P1A6NDR6 274 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 MFSD2BA6NFX1 497 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 TNFSF12O43508 249 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 XRCC3O43542 346 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 REG1AP05451 166 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 ARPC4P59998 168 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 BTNL8Q6UX41 500 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 BEST4Q8NFU0 473 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 OR4A5Q8NH83 315 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 SECTM1Q8WVN6 248 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 GGTLC1Q9BX51 225 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 COMMD3Q9UBI1 195 aa11.17□□□□□ -0.62
CLN3-236ENST00000568558 SCAF4O95104 1147 aaKnown RBP11.16□□□□□ -0.62
CLN3-236ENST00000568558 DEFA4P12838 97 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 FCGR2CP31995 323 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 SPCS2Q15005 226 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 TM4SF20Q53R12 229 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 UNQ9165/PRO28630Q6UXU0 137 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 SPAG16Q8N0X2 631 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 ZBTB34Q8NCN2 500 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 S100A16Q96FQ6 103 aaKnown RBP11.16□□□□□ -0.62
CLN3-236ENST00000568558 CXorf58Q96LI9 332 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 OVOL2Q9BRP0 275 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 AIFM2Q9BRQ8 373 aa11.16□□□□□ -0.62
CLN3-236ENST00000568558 LOC102724200A0A096LPH7 203 aaPredicted RBP11.15□□□□□ -0.62
CLN3-236ENST00000568558 TRAV25A0A0B4J276 109 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 IGLC7A0M8Q6 106 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 RBFOX2O43251 390 aaKnown RBP eCLIP11.15□□□□□ -0.62
CLN3-236ENST00000568558 HPGDSO60760 199 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 PPYP01298 95 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 CLEC3BP05452 202 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 C8orf88P0DMB2 117 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 RORCP51449 518 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 TAS2R31P59538 309 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 TAS2R20P59543 309 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 OR2B8PP59922 312 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 POU2AF1Q16633 256 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 ANKRD55Q3KP44 614 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 TMEM69Q5SWH9 247 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 HOGA1Q86XE5 327 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 CLVS1Q8IUQ0 354 aaPredicted RBP11.15□□□□□ -0.62
CLN3-236ENST00000568558 ZNF502Q8TBZ5 544 aa11.15□□□□□ -0.62
CLN3-236ENST00000568558 MARC2Q969Z3 335 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms