RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 PRR25Q96S07 402 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 TP53RKQ96S44 253 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 SDHCQ99643 169 aaPredicted RBP10.73□□□□□ -0.69
CLN3-235ENST00000568497 SLC2A9Q9NRM0 540 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 COA4Q9NYJ1 87 aa10.73□□□□□ -0.69
CLN3-235ENST00000568497 LSM4Q9Y4Z0 139 aaKnown RBP10.73□□□□□ -0.69
CLN3-235ENST00000568497 ANKRD34BA5PLL1 514 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 TEX22C9J3V5 150 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 ZNF701M0R085 212 aaPredicted RBP10.72□□□□□ -0.69
CLN3-235ENST00000568497 CCL24O00175 119 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 MPPED1O15442 326 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 TRBV12-3P01733 135 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 IGHV3-23P01764 117 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 TRGV3P03979 118 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 ELANEP08246 267 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 AKAIN1P0CW23 69 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 F2RP25116 425 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 S100A5P33763 92 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 ZNF45Q02386 682 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 KLF9Q13886 244 aaPredicted RBP10.72□□□□□ -0.69
CLN3-235ENST00000568497 TMEM65Q6PI78 240 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 Q8N402 240 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 OR10W1Q8NGF6 305 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 TMEM167AQ8TBQ9 72 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 SRRQ9GZT4 340 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 VSIG4Q9Y279 399 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 HYDINQ4G0P3 5121 aa10.72□□□□□ -0.69
CLN3-235ENST00000568497 IGHV4OR15-8A0A075B7B6 117 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 A0A087WW49 117 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 UPK2O00526 184 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 HPRT1P00492 218 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 KIR2DS2P43631 304 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 RPL27AP46776 148 aaKnown RBP10.71□□□□□ -0.69
CLN3-235ENST00000568497 CRIP2P52943 208 aaPredicted RBP10.71□□□□□ -0.69
CLN3-235ENST00000568497 SLURP1P55000 103 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 MSMO1Q15800 293 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 CNPY1Q3B7I2 92 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 CMTM1Q8IZ96 169 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 SLC38A6Q8IZM9 456 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 RNF152Q8N8N0 203 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 TERB2Q8NHR7 220 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 MYOZ3Q8TDC0 251 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 RTBDNQ9BSG5 229 aaPredicted RBP10.71□□□□□ -0.69
CLN3-235ENST00000568497 HINT2Q9BX68 163 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 C5orf66Q9H5L9 145 aa10.71□□□□□ -0.69
CLN3-235ENST00000568497 A0A0G2JRQ6 117 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 RBMY1BA6NDE4 496 aaKnown RBP10.7□□□□□ -0.7
CLN3-235ENST00000568497 RBMY1EA6NEQ0 496 aaKnown RBP10.7□□□□□ -0.7
CLN3-235ENST00000568497 A6NHS1 94 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 ACTL6BO94805 426 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 HRASP01112 189 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 RBMY1DP0C7P1 496 aaKnown RBP10.7□□□□□ -0.7
CLN3-235ENST00000568497 NQO2P16083 231 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 HLA-GP17693 338 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 UCP3P55916 312 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 MRPS10P82664 201 aaKnown RBP10.7□□□□□ -0.7
CLN3-235ENST00000568497 AKIRIN2Q53H80 203 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 MMD2Q8IY49 270 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 ARRDC1Q8N5I2 433 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 POC5Q8NA72 575 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 OR11H1Q8NG94 326 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 C15orf40Q8WUR7 153 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 P2RX4Q99571 388 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 GON7Q9BXV9 100 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 ZFP57Q9NU63 452 aa10.7□□□□□ -0.7
CLN3-235ENST00000568497 IGHV3-21A0A0B4J1V1 117 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 DISC1C4P0D8 188 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 OR2J3O76001 311 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 TPPPO94811 219 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 IGKV1-5P01602 117 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 CDX1P47902 265 aaPredicted RBP10.69□□□□□ -0.7
CLN3-235ENST00000568497 TAS2R31P59538 309 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 RPL8P62917 257 aaKnown RBP10.69□□□□□ -0.7
CLN3-235ENST00000568497 TMEM267Q0VDI3 215 aaPredicted RBP10.69□□□□□ -0.7
CLN3-235ENST00000568497 ZNF57Q68EA5 555 aaPredicted RBP10.69□□□□□ -0.7
CLN3-235ENST00000568497 HAPLN4Q86UW8 402 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 COMMD1Q8N668 190 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 OR1N2Q8NGR9 330 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 LHFPL5Q8TAF8 219 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 TMEM230Q96A57 120 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 SELENOKQ9Y6D0 94 aa10.69□□□□□ -0.7
CLN3-235ENST00000568497 CSMD3Q7Z407 3707 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 TEX50A0A1B0GTY4 177 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 MARCH11A6NNE9 402 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 I3L521 148 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 RBFOX2O43251 390 aaKnown RBP eCLIP10.68□□□□□ -0.7
CLN3-235ENST00000568497 NXPH3O95157 252 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 OR5AC1P0C628 307 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 TBPP20226 339 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 CCR6P51684 374 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 MEF2DQ14814 521 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 C4orf3Q8WVX3 66 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 PLEKHA2Q9HB19 425 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 ZC4H2Q9NQZ6 224 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 BET1LQ9NYM9 111 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 COPZ2Q9P299 210 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 ZNF580Q9UK33 172 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 DMRT1Q9Y5R6 373 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 STARD9Q9P2P6 4700 aa10.68□□□□□ -0.7
CLN3-235ENST00000568497 C3orf85A0A1B0GTC6 90 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms