RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 SPATA2Q9UM82 520 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 UFC1Q9Y3C8 167 aa13.05□□□□□ -0.32
CLK3-221ENST00000568139 RGS10O43665 173 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 HRASP01112 189 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 REG1AP05451 166 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 MYOD1P15172 320 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 CRHBPP24387 322 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 CDNFQ49AH0 187 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 LGALS9CQ6DKI2 356 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 CNIH2Q6PI25 160 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 ZNF66Q6ZN08 573 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 SSX9Q7RTT3 188 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 ZNF436Q9C0F3 470 aaPredicted RBP13.04□□□□□ -0.32
CLK3-221ENST00000568139 ATG5Q9H1Y0 275 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 VCXQ9H320 206 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 UBQLN2Q9UHD9 624 aa13.04□□□□□ -0.32
CLK3-221ENST00000568139 TSPAN4O14817 238 aa13.03□□□□□ -0.32
CLK3-221ENST00000568139 HLA-GP17693 338 aa13.03□□□□□ -0.32
CLK3-221ENST00000568139 GPR183P32249 361 aa13.03□□□□□ -0.32
CLK3-221ENST00000568139 HACD4Q5VWC8 232 aa13.03□□□□□ -0.32
CLK3-221ENST00000568139 PLET1Q6UQ28 207 aa13.03□□□□□ -0.32
CLK3-221ENST00000568139 TMEM217Q8N7C4 229 aa13.03□□□□□ -0.32
CLK3-221ENST00000568139 OR4A5Q8NH83 315 aa13.03□□□□□ -0.32
CLK3-221ENST00000568139 BET1LQ9NYM9 111 aa13.03□□□□□ -0.32
CLK3-221ENST00000568139 HERC2O95714 4834 aa13.02□□□□□ -0.32
CLK3-221ENST00000568139 IGHV3-35A0A0C4DH35 117 aa13.02□□□□□ -0.33
CLK3-221ENST00000568139 DEDDO75618 318 aa13.02□□□□□ -0.33
CLK3-221ENST00000568139 RAB3BP20337 219 aa13.02□□□□□ -0.33
CLK3-221ENST00000568139 PTBP1P26599 531 aaKnown RBP eCLIP13.02□□□□□ -0.33
CLK3-221ENST00000568139 OR2B8PP59922 312 aa13.02□□□□□ -0.33
CLK3-221ENST00000568139 PRSS48Q7RTY5 328 aa13.02□□□□□ -0.33
CLK3-221ENST00000568139 STPG3Q8N7X2 389 aa13.02□□□□□ -0.33
CLK3-221ENST00000568139 PHLDA1Q8WV24 401 aaPredicted RBP13.02□□□□□ -0.33
CLK3-221ENST00000568139 TAS2R8Q9NYW2 309 aa13.02□□□□□ -0.33
CLK3-221ENST00000568139 IGLC7A0M8Q6 106 aa13.01□□□□□ -0.33
CLK3-221ENST00000568139 ODF3L2Q3SX64 289 aa13.01□□□□□ -0.33
CLK3-221ENST00000568139 TIMM50Q3ZCQ8 353 aa13.01□□□□□ -0.33
CLK3-221ENST00000568139 NR2C2APQ86WQ0 139 aa13.01□□□□□ -0.33
CLK3-221ENST00000568139 TMEM190Q8WZ59 177 aa13.01□□□□□ -0.33
CLK3-221ENST00000568139 GPHA2Q96T91 129 aa13.01□□□□□ -0.33
CLK3-221ENST00000568139 AIFM2Q9BRQ8 373 aa13.01□□□□□ -0.33
CLK3-221ENST00000568139 CCDC90BQ9GZT6 254 aa13.01□□□□□ -0.33
CLK3-221ENST00000568139 TGOLN2O43493 480 aa13□□□□□ -0.33
CLK3-221ENST00000568139 MYL9P24844 172 aa13□□□□□ -0.33
CLK3-221ENST00000568139 NUDCD2Q8WVJ2 157 aa13□□□□□ -0.33
CLK3-221ENST00000568139 SRSF8Q9BRL6 282 aaKnown RBP13□□□□□ -0.33
CLK3-221ENST00000568139 THYN1Q9P016 225 aa13□□□□□ -0.33
CLK3-221ENST00000568139 ANXA10Q9UJ72 324 aa13□□□□□ -0.33
CLK3-221ENST00000568139 S1PR2O95136 353 aa12.99□□□□□ -0.33
CLK3-221ENST00000568139 MSMO1Q15800 293 aa12.99□□□□□ -0.33
CLK3-221ENST00000568139 LAMTOR1Q6IAA8 161 aa12.99□□□□□ -0.33
CLK3-221ENST00000568139 VN1R17PQ8TDU5 208 aa12.99□□□□□ -0.33
CLK3-221ENST00000568139 GALNT14Q96FL9 552 aa12.99□□□□□ -0.33
CLK3-221ENST00000568139 MAP6D1Q9H9H5 199 aa12.99□□□□□ -0.33
CLK3-221ENST00000568139 HRASLSQ9HDD0 168 aa12.99□□□□□ -0.33
CLK3-221ENST00000568139 DAZ1Q9NQZ3 744 aaKnown RBP12.99□□□□□ -0.33
CLK3-221ENST00000568139 TRAV3A0A0B4J244 114 aa12.98□□□□□ -0.33
CLK3-221ENST00000568139 TRDV1A0A1B0GX56 115 aa12.98□□□□□ -0.33
CLK3-221ENST00000568139 TMEM235A6NFC5 223 aa12.98□□□□□ -0.33
CLK3-221ENST00000568139 UPK2O00526 184 aa12.98□□□□□ -0.33
CLK3-221ENST00000568139 RBFOX2O43251 390 aaKnown RBP eCLIP12.98□□□□□ -0.33
CLK3-221ENST00000568139 SSX5O60225 188 aa12.98□□□□□ -0.33
CLK3-221ENST00000568139 RPL35AP18077 110 aaKnown RBP12.98□□□□□ -0.33
CLK3-221ENST00000568139 POU2AF1Q16633 256 aa12.98□□□□□ -0.33
CLK3-221ENST00000568139 SPAG16Q8N0X2 631 aa12.98□□□□□ -0.33
CLK3-221ENST00000568139 CCL28Q9NRJ3 127 aa12.98□□□□□ -0.33
CLK3-221ENST00000568139 TNFSF12O43508 249 aa12.97□□□□□ -0.33
CLK3-221ENST00000568139 FGF2P09038 288 aa12.97□□□□□ -0.33
CLK3-221ENST00000568139 RPA2P15927 270 aa12.97□□□□□ -0.33
CLK3-221ENST00000568139 FCGR2BP31994 310 aaPredicted RBP12.97□□□□□ -0.33
CLK3-221ENST00000568139 AQP4P55087 323 aa12.97□□□□□ -0.33
CLK3-221ENST00000568139 TAS2R31P59538 309 aa12.97□□□□□ -0.33
CLK3-221ENST00000568139 TBCEQ15813 527 aaPredicted RBP12.97□□□□□ -0.33
CLK3-221ENST00000568139 ZNF367Q7RTV3 350 aa12.97□□□□□ -0.33
CLK3-221ENST00000568139 ZBTB34Q8NCN2 500 aa12.97□□□□□ -0.33
CLK3-221ENST00000568139 BSCL2Q96G97 398 aaPredicted RBP12.97□□□□□ -0.33
CLK3-221ENST00000568139 NDUFB11Q9NX14 153 aa12.97□□□□□ -0.33
CLK3-221ENST00000568139 DNAH10Q8IVF4 4471 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 OR2T8A6NH00 312 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 OR4C46A6NHA9 309 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 K7EMT4 169 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 NDUFA4O00483 81 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 HPRT1P00492 218 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 NQO2P16083 231 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 GNG2P59768 71 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 SPSB3Q6PJ21 355 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 ZNF773Q6PK81 442 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 OR10W1Q8NGF6 305 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 SECTM1Q8WVN6 248 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 ATP6V0BQ99437 205 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 COMMD5Q9GZQ3 224 aa12.96□□□□□ -0.33
CLK3-221ENST00000568139 CYB5BO43169 146 aa12.95□□□□□ -0.34
CLK3-221ENST00000568139 SCGNO76038 276 aa12.95□□□□□ -0.34
CLK3-221ENST00000568139 CTSDP07339 412 aaPredicted RBP12.95□□□□□ -0.34
CLK3-221ENST00000568139 THOC7Q6I9Y2 204 aaKnown RBP12.95□□□□□ -0.34
CLK3-221ENST00000568139 C22orf42Q6IC83 251 aa12.95□□□□□ -0.34
CLK3-221ENST00000568139 GDPD1Q8N9F7 314 aa12.95□□□□□ -0.34
CLK3-221ENST00000568139 OR13F1Q8NGS4 319 aa12.95□□□□□ -0.34
CLK3-221ENST00000568139 OR5B3Q8NH48 314 aa12.95□□□□□ -0.34
CLK3-221ENST00000568139 GATAD1Q8WUU5 269 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms