RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 C1orf159Q96HA4 380 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 OR51B2Q9Y5P1 312 aa16.54■□□□□ 0.24
CLN3-230ENST00000568076 hCG_1809904A0A1W2PP81 198 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 A0A1W2PR64 198 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 A0A1W2PRV1 198 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 UPK2O00526 184 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 OR2C1O95371 312 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 IFNA4P05014 189 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 CHRNB4P30926 498 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 DLX6P56179 175 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 GATAD1Q8WUU5 269 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 ACOT6Q3I5F7 207 aaPredicted RBP16.53■□□□□ 0.24
CLN3-230ENST00000568076 RBMS3Q6XE24 437 aaKnown RBP16.53■□□□□ 0.24
CLN3-230ENST00000568076 SLC24A4Q8NFF2 622 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 MGST2Q99735 147 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 PRNDQ9UKY0 176 aa16.53■□□□□ 0.24
CLN3-230ENST00000568076 A0A087WWC5 75 aa16.52■□□□□ 0.24
CLN3-230ENST00000568076 CA2P00918 260 aa16.52■□□□□ 0.24
CLN3-230ENST00000568076 RAB5AP20339 215 aa16.52■□□□□ 0.24
CLN3-230ENST00000568076 NPY1RP25929 384 aa16.52■□□□□ 0.24
CLN3-230ENST00000568076 ARSJQ5FYB0 599 aaPredicted RBP16.52■□□□□ 0.24
CLN3-230ENST00000568076 H0YJW9 148 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 CYB5BO43169 146 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 MPDU1O75352 247 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 YIF1AO95070 293 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 OPN1MWP04001 364 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 SAA1P0DJI8 122 aaPredicted RBP16.51■□□□□ 0.23
CLN3-230ENST00000568076 OPN1MW2P0DN77 364 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 OPN1MW3P0DN78 364 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 MAS1LP35410 378 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 REG1BP48304 166 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 ADORA2A-AS1P86434 159 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 MEF2BQ02080 365 aaPredicted RBP16.51■□□□□ 0.23
CLN3-230ENST00000568076 DIAPH2-AS1Q14236 149 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 HINT2Q9BX68 163 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 SEC14L6B5MCN3 397 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 LYNX1G3V0Z9 82 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 J3QR06 171 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 LYNX1P0DP58 116 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 CDC34P49427 236 aaPredicted RBP16.51■□□□□ 0.23
CLN3-230ENST00000568076 TMEM155Q4W5P6 130 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 OR5AN1Q8NGI8 311 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 ZNF596Q8TC21 504 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 GGTLC1Q9BX51 225 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 ZNF257Q9Y2Q1 563 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 LSM4Q9Y4Z0 139 aaKnown RBP16.51■□□□□ 0.23
CLN3-230ENST00000568076 SPTA1P02549 2419 aa16.51■□□□□ 0.23
CLN3-230ENST00000568076 KBTBD11O94819 623 aa16.5■□□□□ 0.23
CLN3-230ENST00000568076 OPRK1P41145 380 aa16.5■□□□□ 0.23
CLN3-230ENST00000568076 PRCDQ00LT1 54 aa16.5■□□□□ 0.23
CLN3-230ENST00000568076 WDR25Q64LD2 544 aaPredicted RBP16.5■□□□□ 0.23
CLN3-230ENST00000568076 ENY2Q9NPA8 101 aa16.5■□□□□ 0.23
CLN3-230ENST00000568076 BET1LQ9NYM9 111 aa16.5■□□□□ 0.23
CLN3-230ENST00000568076 TEX50A0A1B0GTY4 177 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 NDUFA2O43678 99 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 TSPAN9O75954 239 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 AGAP20933 346 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 MIC13Q5XKP0 118 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 MUC15Q8N387 334 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 C11orf42Q8N5U0 333 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 LINC00311Q8N616 119 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 SDF2L1Q9HCN8 221 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 COL8A2P25067 703 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 PSMB3P49720 205 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 C8orf31Q8N9H6 132 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 OR10X1Q8NGY0 326 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 OSR1Q8TAX0 266 aaPredicted RBP16.49■□□□□ 0.23
CLN3-230ENST00000568076 PATZ1Q9HBE1 687 aaKnown RBP16.49■□□□□ 0.23
CLN3-230ENST00000568076 NPVFQ9HCQ7 196 aa16.49■□□□□ 0.23
CLN3-230ENST00000568076 KLF2Q9Y5W3 355 aaPredicted RBP16.49■□□□□ 0.23
CLN3-230ENST00000568076 C1orf196B1AJZ1 125 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 APOA2P02652 100 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 RAB5BP61020 215 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 ZNF343Q6P1L6 599 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 ST6GALNAC6Q969X2 333 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 HARBI1Q96MB7 349 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 NABP2Q9BQ15 211 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 PLEKHA3Q9HB20 300 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 MANBALQ9NQG1 85 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 BIN3Q9NQY0 253 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 PXMP4Q9Y6I8 212 aa16.48■□□□□ 0.23
CLN3-230ENST00000568076 ZNF672Q499Z4 452 aaPredicted RBP16.47■□□□□ 0.23
CLN3-230ENST00000568076 TMEM177Q53S58 311 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 IQCF2Q8IXL9 164 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 MALSU1Q96EH3 234 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 A0A087X0M5 115 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 A0A1B0GX30 115 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 SOX15O60248 233 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 PAGE4O60829 102 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 IGHV1-8P0DP01 117 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 PNRC1Q12796 327 aaPredicted RBP16.47■□□□□ 0.23
CLN3-230ENST00000568076 RAB1CQ92928 201 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 TMEM186Q96B77 213 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 SPTBN4Q9H254 2564 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 TNCP24821 2201 aa16.47■□□□□ 0.23
CLN3-230ENST00000568076 B4DEV8 164 aa16.46■□□□□ 0.23
CLN3-230ENST00000568076 ELOBQ15370 118 aa16.46■□□□□ 0.23
CLN3-230ENST00000568076 FAM71F2Q6NXP2 309 aa16.46■□□□□ 0.23
CLN3-230ENST00000568076 Q8WTZ3 238 aa16.46■□□□□ 0.23
CLN3-230ENST00000568076 SSMEM1Q8WWF3 244 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms