RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 HIST1H1BP16401 226 aaKnown RBP12.11□□□□□ -0.47
CLN3-229ENST00000567963 HLA-GP17693 338 aa12.11□□□□□ -0.47
CLN3-229ENST00000567963 CBLN1P23435 193 aa12.11□□□□□ -0.47
CLN3-229ENST00000567963 TIMM50Q3ZCQ8 353 aa12.11□□□□□ -0.47
CLN3-229ENST00000567963 SPAG16Q8N0X2 631 aa12.11□□□□□ -0.47
CLN3-229ENST00000567963 EEF1AKMT3Q96AZ1 226 aa12.11□□□□□ -0.47
CLN3-229ENST00000567963 DIABLOQ9NR28 239 aa12.11□□□□□ -0.47
CLN3-229ENST00000567963 LOC100506127A0A0U1RQW1 187 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 RBMY1BA6NDE4 496 aaKnown RBP12.1□□□□□ -0.47
CLN3-229ENST00000567963 RBMY1EA6NEQ0 496 aaKnown RBP12.1□□□□□ -0.47
CLN3-229ENST00000567963 OR11H12B2RN74 326 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 SULT1C2O00338 296 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 RBFOX2O43251 390 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLN3-229ENST00000567963 REG1AP05451 166 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 RBMY1DP0C7P1 496 aaKnown RBP12.1□□□□□ -0.47
CLN3-229ENST00000567963 DEFA4P12838 97 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 GUCA2BQ16661 112 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 FAM106AQ4KMX7 169 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 GIMAP1Q8WWP7 306 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 WDR89Q96FK6 387 aaPredicted RBP12.1□□□□□ -0.47
CLN3-229ENST00000567963 SLC5A7Q9GZV3 580 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 AUNIPQ9H7T9 357 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 RETNQ9HD89 108 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 HRASLSQ9HDD0 168 aa12.1□□□□□ -0.47
CLN3-229ENST00000567963 IGLV11-55A0A075B6I3 123 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 HPRT1P00492 218 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 FCER2P06734 321 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 TAS2R31P59538 309 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 OR2B8PP59922 312 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 OR5AP2Q8NGF4 316 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 CACNG8Q8WXS5 425 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 WFDC10AQ9H1F0 79 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 SRD5A3Q9H8P0 318 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 DNAH1Q9P2D7 4330 aa12.09□□□□□ -0.47
CLN3-229ENST00000567963 TRBV7-1A0A0A6YYK4 115 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 ZNF320A2RRD8 509 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 TMEM213A2RRL7 107 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 CLEC3BP05452 202 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 NQO2P16083 231 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 FXYD4P59646 89 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 CATR1Q13166 79 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 POU2AF1Q16633 256 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 ZNF818PQ6ZRF7 136 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 CXorf58Q96LI9 332 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 FAM110AQ9BQ89 295 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 SELENOKQ9Y6D0 94 aa12.08□□□□□ -0.47
CLN3-229ENST00000567963 TRAV3A0A0B4J244 114 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 MFSD2BA6NFX1 497 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 A8MWP6 167 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 UPK2O00526 184 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 TMEM127O75204 238 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 CBX5P45973 191 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 NEDD8Q15843 81 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 ZNF57Q68EA5 555 aaPredicted RBP12.08□□□□□ -0.48
CLN3-229ENST00000567963 TMEM61Q8N0U2 210 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 UXS1Q8NBZ7 420 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 MLXQ9UH92 298 aa12.08□□□□□ -0.48
CLN3-229ENST00000567963 IGLC7A0M8Q6 106 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 MEIS3P1A6NDR6 274 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 FGF2P09038 288 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 SMIM18P0DKX4 95 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 SLC16A13Q7RTY0 426 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 TMEM17Q86X19 198 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 OR51H1Q8NH63 302 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 CD300LFQ8TDQ1 290 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 SRSF8Q9BRL6 282 aaKnown RBP12.07□□□□□ -0.48
CLN3-229ENST00000567963 COMMD5Q9GZQ3 224 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 PLEKHA2Q9HB19 425 aa12.07□□□□□ -0.48
CLN3-229ENST00000567963 XRCC3O43542 346 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 GNRHRP30968 328 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 TM4SF20Q53R12 229 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 DHRS11Q6UWP2 260 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 UNQ9165/PRO28630Q6UXU0 137 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 DMBX1Q8NFW5 382 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 IL17DQ8TAD2 202 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 ZNF502Q8TBZ5 544 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 TMEM140Q9NV12 185 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 THYN1Q9P016 225 aa12.06□□□□□ -0.48
CLN3-229ENST00000567963 S1PR2O95136 353 aa12.05□□□□□ -0.48
CLN3-229ENST00000567963 PTBP1P26599 531 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLN3-229ENST00000567963 AADACL3Q5VUY0 350 aa12.05□□□□□ -0.48
CLN3-229ENST00000567963 CROCCP3Q8IVE0 287 aa12.05□□□□□ -0.48
CLN3-229ENST00000567963 TSPAN14Q8NG11 270 aa12.05□□□□□ -0.48
CLN3-229ENST00000567963 OR10W1Q8NGF6 305 aa12.05□□□□□ -0.48
CLN3-229ENST00000567963 BORCS5Q969J3 196 aa12.05□□□□□ -0.48
CLN3-229ENST00000567963 S100A16Q96FQ6 103 aaKnown RBP12.05□□□□□ -0.48
CLN3-229ENST00000567963 QTRT1Q9BXR0 403 aaKnown RBP12.05□□□□□ -0.48
CLN3-229ENST00000567963 A0A087WXM4 84 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 SCAF4O95104 1147 aaKnown RBP12.04□□□□□ -0.48
CLN3-229ENST00000567963 C8orf88P0DMB2 117 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 GPR183P32249 361 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 TGFBR1P36897 503 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 RFX2P48378 723 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 HERV-K104P61576 105 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 ANKRD55Q3KP44 614 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 OR52B4Q8NGK2 314 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 IFT46Q9NQC8 304 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 EHFQ9NZC4 300 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 COMMD9Q9P000 198 aa12.04□□□□□ -0.48
CLN3-229ENST00000567963 HYDINQ4G0P3 5121 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms