RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 DMRT1Q9Y5R6 373 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 RYR3Q15413 4870 aa17.05■□□□□ 0.32
CLN3-215ENST00000565236 UPK2O00526 184 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 IGHV3-23P01764 117 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 PMP2P02689 132 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 REG1AP05451 166 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 PRSS3P35030 304 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 TAS2R46P59540 309 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 OR2B8PP59922 312 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 POU2AF1Q16633 256 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 CLEC19AQ6UXS0 136 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 OR5H2Q8NGV7 314 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 MUC7Q8TAX7 377 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 DYNLRB2Q8TF09 96 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 SLC25A46Q96AG3 418 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 EEF1AKMT3Q96AZ1 226 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 THAP7Q9BT49 309 aaPredicted RBP17.04■□□□□ 0.32
CLN3-215ENST00000565236 S4R3C0 116 aa17.04■□□□□ 0.32
CLN3-215ENST00000565236 TRAV3A0A0B4J244 114 aa17.03■□□□□ 0.32
CLN3-215ENST00000565236 CGB1A6NKQ9 187 aa17.03■□□□□ 0.32
CLN3-215ENST00000565236 ARL3P36405 182 aa17.03■□□□□ 0.32
CLN3-215ENST00000565236 CD300EQ496F6 205 aaPredicted RBP17.03■□□□□ 0.32
CLN3-215ENST00000565236 ADAMTSL5Q6ZMM2 481 aa17.03■□□□□ 0.32
CLN3-215ENST00000565236 TMEM140Q9NV12 185 aa17.03■□□□□ 0.32
CLN3-215ENST00000565236 ANAPC10Q9UM13 185 aa17.03■□□□□ 0.32
CLN3-215ENST00000565236 SMIM31A0A1B0GVY4 71 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 LGALS9O00182 355 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 S1PR2O95136 353 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 FOLR2P14207 255 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 NAT1P18440 290 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 KLK9Q2XQG4 91 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 GPHB5Q86YW7 130 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 OR6F1Q8NGZ6 308 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 MOB3AQ96BX8 217 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 CCDC140Q96MF4 163 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 COMMD9Q9P000 198 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 COMMD3Q9UBI1 195 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 KLK9Q9UKQ9 250 aa17.02■□□□□ 0.32
CLN3-215ENST00000565236 DNAH7Q8WXX0 4024 aa17.02■□□□□ 0.31
CLN3-215ENST00000565236 C2orf70A6NJV1 201 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 PGLYRP1O75594 196 aaPredicted RBP17.01■□□□□ 0.31
CLN3-215ENST00000565236 RLN1P04808 185 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 RPA2P15927 270 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 ERVK-16P61578 105 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 DEFB114Q30KQ6 69 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 FAM106AQ4KMX7 169 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 CMTM1Q8IZ96 169 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 CXorf58Q96LI9 332 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 SRSF8Q9BRL6 282 aaKnown RBP17.01■□□□□ 0.31
CLN3-215ENST00000565236 FUNDC2Q9BWH2 189 aa17.01■□□□□ 0.31
CLN3-215ENST00000565236 IGLV11-55A0A075B6I3 123 aa17■□□□□ 0.31
CLN3-215ENST00000565236 TRBV7-1A0A0A6YYK4 115 aa17■□□□□ 0.31
CLN3-215ENST00000565236 IGLC7A0M8Q6 106 aa17■□□□□ 0.31
CLN3-215ENST00000565236 EIF4EP06730 217 aaKnown RBP17■□□□□ 0.31
CLN3-215ENST00000565236 FGF2P09038 288 aa17■□□□□ 0.31
CLN3-215ENST00000565236 F2RP25116 425 aa17■□□□□ 0.31
CLN3-215ENST00000565236 NCS1P62166 190 aa17■□□□□ 0.31
CLN3-215ENST00000565236 HAGHQ16775 308 aa17■□□□□ 0.31
CLN3-215ENST00000565236 LYSMD2Q8IV50 215 aa17■□□□□ 0.31
CLN3-215ENST00000565236 LAX1Q8IWV1 398 aa17■□□□□ 0.31
CLN3-215ENST00000565236 CITED4Q96RK1 184 aa17■□□□□ 0.31
CLN3-215ENST00000565236 QTRT1Q9BXR0 403 aaKnown RBP17■□□□□ 0.31
CLN3-215ENST00000565236 TECRQ9NZ01 308 aaKnown RBP17■□□□□ 0.31
CLN3-215ENST00000565236 ZNF320A2RRD8 509 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 ZNF785A8K8V0 405 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 APOA1P02647 267 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 CLEC3BP05452 202 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 HLA-DMAP28067 261 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 LPAR6P43657 344 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 CD81P60033 236 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 VBP1P61758 197 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 DGCR14Q96DF8 476 aaKnown RBP16.99■□□□□ 0.31
CLN3-215ENST00000565236 SPATA25Q9BR10 227 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 SLC2A8Q9NY64 477 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 THYN1Q9P016 225 aa16.99■□□□□ 0.31
CLN3-215ENST00000565236 MFSD2BA6NFX1 497 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 MARCH11A6NNE9 402 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 CYB5BO43169 146 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 TPPPO94811 219 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 TRAPPC2P0DI81 140 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 TRAPPC2BP0DI82 140 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 LYL1P12980 280 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 CBLN1P23435 193 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 HRH1P35367 487 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 GUCA2BQ16661 112 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 CASC10Q5T4H9 136 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 OR10W1Q8NGF6 305 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 GPX8Q8TED1 209 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 CMTM3Q96MX0 182 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 NEURL2Q9BR09 285 aa16.98■□□□□ 0.31
CLN3-215ENST00000565236 TEX50A0A1B0GTY4 177 aa16.97■□□□□ 0.31
CLN3-215ENST00000565236 GPR31O00270 319 aa16.97■□□□□ 0.31
CLN3-215ENST00000565236 KRASP01116 189 aa16.97■□□□□ 0.31
CLN3-215ENST00000565236 EDN2P20800 178 aa16.97■□□□□ 0.31
CLN3-215ENST00000565236 TSPAN5P62079 268 aa16.97■□□□□ 0.31
CLN3-215ENST00000565236 THOC7Q6I9Y2 204 aaKnown RBP16.97■□□□□ 0.31
CLN3-215ENST00000565236 OR1L8Q8NGR8 309 aa16.97■□□□□ 0.31
CLN3-215ENST00000565236 FCAMRQ8WWV6 532 aa16.97■□□□□ 0.31
CLN3-215ENST00000565236 PLEKHA3Q9HB20 300 aa16.97■□□□□ 0.31
CLN3-215ENST00000565236 SCPEP1Q9HB40 452 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms