RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 CNIH1O95406 144 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 SMCO1Q147U7 214 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 FXYD3Q14802 87 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 TET2Q6N021 2002 aaPredicted RBP16.32■□□□□ 0.2
CLN3-212ENST00000564574 Q6ZRM9 215 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 Q6ZSV7 163 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 OR5B3Q8NH48 314 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 COMMD5Q9GZQ3 224 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 TMEM14BQ9NUH8 114 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 ZNF257Q9Y2Q1 563 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 NSG2Q9Y328 171 aa16.32■□□□□ 0.2
CLN3-212ENST00000564574 RPL27AP46776 148 aaKnown RBP16.31■□□□□ 0.2
CLN3-212ENST00000564574 COMPP49747 757 aaPredicted RBP16.31■□□□□ 0.2
CLN3-212ENST00000564574 GNB1P62873 340 aa16.31■□□□□ 0.2
CLN3-212ENST00000564574 SSBP2P81877 361 aaPredicted RBP16.31■□□□□ 0.2
CLN3-212ENST00000564574 IZUMO4Q1ZYL8 232 aa16.31■□□□□ 0.2
CLN3-212ENST00000564574 AARDQ4LEZ3 155 aa16.31■□□□□ 0.2
CLN3-212ENST00000564574 Q6ZNX1 250 aa16.31■□□□□ 0.2
CLN3-212ENST00000564574 SRSF12Q8WXF0 261 aaKnown RBP16.31■□□□□ 0.2
CLN3-212ENST00000564574 ARPC1AQ92747 370 aa16.31■□□□□ 0.2
CLN3-212ENST00000564574 C16orf95Q9H693 158 aa16.31■□□□□ 0.2
CLN3-212ENST00000564574 ZNF580Q9UK33 172 aa16.31■□□□□ 0.2
CLN3-212ENST00000564574 OR51B2Q9Y5P1 312 aa16.31■□□□□ 0.2
CLN3-212ENST00000564574 OR2B8PP59922 312 aa16.3■□□□□ 0.2
CLN3-212ENST00000564574 ARSJQ5FYB0 599 aaPredicted RBP16.3■□□□□ 0.2
CLN3-212ENST00000564574 OR1L8Q8NGR8 309 aa16.3■□□□□ 0.2
CLN3-212ENST00000564574 OR52E5Q8NH55 327 aa16.3■□□□□ 0.2
CLN3-212ENST00000564574 OR2T6Q8NHC8 308 aa16.3■□□□□ 0.2
CLN3-212ENST00000564574 PDCD10Q9BUL8 212 aa16.3■□□□□ 0.2
CLN3-212ENST00000564574 TEX50A0A1B0GTY4 177 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 AP4M1O00189 453 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 IGF1P05019 195 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 CRIP2P52943 208 aaPredicted RBP16.29■□□□□ 0.2
CLN3-212ENST00000564574 HSPE1P61604 102 aaKnown RBP16.29■□□□□ 0.2
CLN3-212ENST00000564574 GSG1LQ6UXU4 331 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 Q6ZS46 218 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 PRIMA1Q86XR5 153 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 OR5M8Q8NGP6 311 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 OR1S1Q8NH92 325 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 ABHD5Q8WTS1 349 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 QTRT1Q9BXR0 403 aaKnown RBP16.29■□□□□ 0.2
CLN3-212ENST00000564574 MED28Q9H204 178 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 PARP11Q9NR21 331 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 CUBNO60494 3623 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 DNHD1Q96M86 4753 aa16.29■□□□□ 0.2
CLN3-212ENST00000564574 CCSO14618 274 aa16.28■□□□□ 0.2
CLN3-212ENST00000564574 GOSR2O14653 212 aa16.28■□□□□ 0.2
CLN3-212ENST00000564574 PITX3O75364 302 aa16.28■□□□□ 0.2
CLN3-212ENST00000564574 VDAC2P45880 294 aaPredicted RBP16.28■□□□□ 0.2
CLN3-212ENST00000564574 NDPQ00604 133 aa16.28■□□□□ 0.2
CLN3-212ENST00000564574 IAH1Q2TAA2 248 aaPredicted RBP16.28■□□□□ 0.2
CLN3-212ENST00000564574 OR4F5Q8NH21 305 aa16.28■□□□□ 0.2
CLN3-212ENST00000564574 SGMS2Q8NHU3 365 aa16.28■□□□□ 0.2
CLN3-212ENST00000564574 TMEM68Q96MH6 324 aa16.28■□□□□ 0.2
CLN3-212ENST00000564574 SRSF8Q9BRL6 282 aaKnown RBP16.28■□□□□ 0.2
CLN3-212ENST00000564574 C13orf42A0A1B0GVH6 325 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 C5orf51A6NDU8 294 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 MPTX1A8MV57 137 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 FAM25EA8MYX2 175 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 FAM90A26D6RGX4 464 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 ATP6V0E1O15342 81 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 ST8SIA3O43173 380 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 TRAPPC2P0DI81 140 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 TRAPPC2BP0DI82 140 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 HKR1P10072 659 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 SRSF2Q01130 221 aaKnown RBP16.27■□□□□ 0.2
CLN3-212ENST00000564574 TMEM267Q0VDI3 215 aaPredicted RBP16.27■□□□□ 0.2
CLN3-212ENST00000564574 PDLIM3Q53GG5 364 aaPredicted RBP16.27■□□□□ 0.2
CLN3-212ENST00000564574 C10orf55Q5SWW7 151 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 HSD17B13Q7Z5P4 300 aaPredicted RBP16.27■□□□□ 0.2
CLN3-212ENST00000564574 ZBTB8BQ8NAP8 495 aaPredicted RBP16.27■□□□□ 0.2
CLN3-212ENST00000564574 GRPEL2Q8TAA5 225 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 OR10C1Q96KK4 312 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 C2orf50Q96LR7 162 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 NDUFA4L2Q9NRX3 87 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 MGAT4CQ9UBM8 478 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 JMJD1CQ15652 2540 aa16.27■□□□□ 0.2
CLN3-212ENST00000564574 LINC01548A6NM66 108 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 IFNA17P01571 189 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 MYOD1P15172 320 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 SPCS3P61009 180 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 RRAS2P62070 204 aaPredicted RBP16.26■□□□□ 0.19
CLN3-212ENST00000564574 PRCDQ00LT1 54 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 C2orf68Q2NKX9 166 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 MRPL41Q8IXM3 137 aaKnown RBP16.26■□□□□ 0.19
CLN3-212ENST00000564574 OR4D5Q8NGN0 318 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 FYTTD1Q96QD9 318 aaKnown RBP16.26■□□□□ 0.19
CLN3-212ENST00000564574 GON7Q9BXV9 100 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 HSPB7Q9UBY9 170 aa16.26■□□□□ 0.19
CLN3-212ENST00000564574 A0A1W2PN81 502 aa16.25■□□□□ 0.19
CLN3-212ENST00000564574 MSGN1A6NI15 193 aa16.25■□□□□ 0.19
CLN3-212ENST00000564574 OPN1MWP04001 364 aa16.25■□□□□ 0.19
CLN3-212ENST00000564574 OPN1MW2P0DN77 364 aa16.25■□□□□ 0.19
CLN3-212ENST00000564574 OPN1MW3P0DN78 364 aa16.25■□□□□ 0.19
CLN3-212ENST00000564574 EGR2P11161 476 aaPredicted RBP16.25■□□□□ 0.19
CLN3-212ENST00000564574 CHRNA7P36544 502 aa16.25■□□□□ 0.19
CLN3-212ENST00000564574 AKIRIN2Q53H80 203 aa16.25■□□□□ 0.19
CLN3-212ENST00000564574 STPG2Q8N412 459 aa16.25■□□□□ 0.19
CLN3-212ENST00000564574 FAM103A1Q9BTL3 118 aaKnown RBP16.25■□□□□ 0.19
CLN3-212ENST00000564574 FBXO7Q9Y3I1 522 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms