RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SRSF8Q9BRL6 282 aaKnown RBP7.31□□□□□ -1.24
LDLR-210ENST00000559340 ZNF430Q9H8G1 570 aaPredicted RBP7.31□□□□□ -1.24
LDLR-210ENST00000559340 ZNF257Q9Y2Q1 563 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 RNF114Q9Y508 228 aa7.31□□□□□ -1.24
LDLR-210ENST00000559340 SVEP1Q4LDE5 3571 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 A0A1B0GU03 582 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 A0A1W2PN81 502 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 FCN1O00602 326 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 CYB5BO43169 146 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 IGKV1-5P01602 117 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 IGF1P05019 195 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 TRAPPC2P0DI81 140 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 TRAPPC2BP0DI82 140 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 CHRNA7P36544 502 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 COMPP49747 757 aaPredicted RBP7.3□□□□□ -1.24
LDLR-210ENST00000559340 HSPE1P61604 102 aaKnown RBP7.3□□□□□ -1.24
LDLR-210ENST00000559340 RELBQ01201 579 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 SMCO1Q147U7 214 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 ANKRD55Q3KP44 614 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 AKIRIN2Q53H80 203 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 FBLN7Q53RD9 439 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 ZNF429Q86V71 674 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.3□□□□□ -1.24
LDLR-210ENST00000559340 SLC35G3Q8N808 338 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 UXS1Q8NBZ7 420 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 SGMS2Q8NHU3 365 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 LINC01006Q8NI28 216 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 LHFPL5Q8TAF8 219 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 GPR146Q96CH1 333 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 ENY2Q9NPA8 101 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 PARP11Q9NR21 331 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 COA4Q9NYJ1 87 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 OR51B2Q9Y5P1 312 aa7.3□□□□□ -1.24
LDLR-210ENST00000559340 FBN1P35555 2871 aaKnown RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 TRAV41A0A0B4J266 112 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 PSMB11A5LHX3 300 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 MSGN1A6NI15 193 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 SH2D7A6NKC9 451 aaPredicted RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 C15orf61A6NNL5 157 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 MED6O75586 246 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 LY86O95711 162 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 IFNA17P01571 189 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 HOXB5P09067 269 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 OR9G9P0C7N8 305 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 CRIP2P52943 208 aaPredicted RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 ERHP84090 104 aaKnown RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 SRSF2Q01130 221 aaKnown RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 PJVKQ0ZLH3 352 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 OXA1LQ15070 435 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 KRTAP24-1Q3LI83 254 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 UNQ5815/PRO19632Q6UWF5 114 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 LYZL2Q7Z4W2 148 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 STPG2Q8N412 459 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 OR5M8Q8NGP6 311 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 OR52E5Q8NH55 327 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 OR1S1Q8NH92 325 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 GRPEL2Q8TAA5 225 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 SRSF12Q8WXF0 261 aaKnown RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 FYTTD1Q96QD9 318 aaKnown RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 HSPB9Q9BQS6 159 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 SEC22CQ9BRL7 303 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 C19orf24Q9BVV8 132 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 QTRT1Q9BXR0 403 aaKnown RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 TPSG1Q9NRR2 321 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 TMEM14BQ9NUH8 114 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 CACNG5Q9UF02 275 aa7.29□□□□□ -1.24
LDLR-210ENST00000559340 FOXA2Q9Y261 457 aaPredicted RBP7.29□□□□□ -1.24
LDLR-210ENST00000559340 TRAV3A0A0B4J244 114 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 TEX50A0A1B0GTY4 177 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 FAM90A26D6RGX4 464 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 ATP6V0E1O15342 81 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 SSNA1O43805 119 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 P0C879 139 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 SPNP16150 400 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 OR2B8PP59922 312 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 SPCS3P61009 180 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 TATDN3Q17R31 274 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 NMSQ5H8A3 153 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 GGNBP1Q5YKI7 109 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 TEX38Q6PEX7 206 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 GSG1LQ6UXU4 331 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 C12orf54Q6X4T0 127 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 Q6ZS46 218 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 LFNGQ8NES3 379 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 OR4X2Q8NGF9 303 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 OR52B4Q8NGK2 314 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 OR1L6Q8NGR2 347 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 RBMXL1Q96E39 390 aaKnown RBP7.28□□□□□ -1.24
LDLR-210ENST00000559340 HINT2Q9BX68 163 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 ZFP57Q9NU63 452 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 SERTAD4Q9NUC0 356 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 PRR13Q9NZ81 148 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 NSG2Q9Y328 171 aa7.28□□□□□ -1.24
LDLR-210ENST00000559340 A0A0B4J293 547 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 C13orf42A0A1B0GVH6 325 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 C7orf66A4D0T2 115 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 C5orf51A6NDU8 294 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 DBX1A6NMT0 343 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 CEBPZOSA8MTT3 80 aa7.27□□□□□ -1.25
LDLR-210ENST00000559340 H3BUA1 57 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms