RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 ZNF32P17041 273 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 RPL7P18124 248 aaKnown RBP3.64□□□□□ -1.83
PRKDC-209ENST00000540819 IL1RNP18510 177 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 RPS3P23396 243 aaKnown RBP eCLIP3.64□□□□□ -1.83
PRKDC-209ENST00000540819 PIGPP57054 158 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 SP6Q3SY56 376 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 AMN1Q8IY45 258 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 H1FOOQ8IZA3 346 aaPredicted RBP3.64□□□□□ -1.83
PRKDC-209ENST00000540819 CD177Q8N6Q3 437 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 LMX1AQ8TE12 382 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 RNF122Q9H9V4 155 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 FAM60AQ9NP50 221 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 ZNF230Q9UIE0 474 aaPredicted RBP3.64□□□□□ -1.83
PRKDC-209ENST00000540819 HSPB8Q9UJY1 196 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 LAMTOR2Q9Y2Q5 125 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 AMMECR1Q9Y4X0 333 aaPredicted RBP3.64□□□□□ -1.83
PRKDC-209ENST00000540819 KIF13BQ9NQT8 1826 aa3.64□□□□□ -1.83
PRKDC-209ENST00000540819 UBR2Q8IWV8 1755 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 DOCK8Q8NF50 2099 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 ATG2BQ96BY7 2078 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 NLRC5Q86WI3 1866 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 RIMS1Q86UR5 1692 aaKnown RBP3.63□□□□□ -1.83
PRKDC-209ENST00000540819 LEUTXA8MZ59 168 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 IGLL5B9A064 214 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 PLA2G10O15496 165 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 CD28P10747 220 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 AKR1C2P52895 323 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 RPS11P62280 158 aaKnown RBP eCLIP3.63□□□□□ -1.83
PRKDC-209ENST00000540819 GNB2P62879 340 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 PSG9Q00887 426 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 UBE2SQ16763 222 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 MRGPRG-AS1Q2M3A8 158 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 LYRM7Q5U5X0 104 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 OR10D4PQ8NGN7 298 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 LINC01560Q8TB33 94 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 SLC25A46Q96AG3 418 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 ZNF222Q9UK12 451 aa3.63□□□□□ -1.83
PRKDC-209ENST00000540819 KLK5Q9Y337 293 aaPredicted RBP3.63□□□□□ -1.83
PRKDC-209ENST00000540819 LTBP1Q14766 1721 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 C11orf94C9JXX5 98 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 TPST1O60507 370 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 IFNA10P01566 189 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 IGHV1-46P01743 117 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 MPC1LP0DKB6 136 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 ELK1P19419 428 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 DNAJB13P59910 316 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 PRSS54Q6PEW0 395 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 OR13C4Q8NGS5 318 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 OR4K13Q8NH42 304 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 CANT1Q8WVQ1 401 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 TM2D3Q9BRN9 247 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 RTL8AQ9BWD3 113 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 PLA2G12AQ9BZM1 189 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 OR2J1Q9GZK6 312 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 IGSF9BQ9UPX0 1349 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 SCRIBQ14160 1630 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 MED23Q9ULK4 1368 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 PLXND1Q9Y4D7 1925 aa3.62□□□□□ -1.83
PRKDC-209ENST00000540819 BCL9O00512 1426 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 SPEF2Q9C093 1822 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 REREQ9P2R6 1566 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 TRAV38-1A0A0B4J264 116 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 CYB5BO43169 146 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 RBFOX2O43251 390 aaKnown RBP eCLIP3.61□□□□□ -1.83
PRKDC-209ENST00000540819 BCL2L11O43521 198 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 IGLV1-47P01700 117 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 HTR1AP08908 422 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 UBBP0CG47 229 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 INAFM2P0DMQ5 153 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 CCR2P41597 374 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 LPAR6P43657 344 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 GABRA2P47869 451 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 RAB13P51153 203 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 MORN2Q502X0 79 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 ISOC1Q96CN7 298 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 PYGO2Q9BRQ0 406 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 OR2D2Q9H210 308 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 EFCAB1Q9HAE3 211 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 ZNF355PQ9NSJ1 428 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 MED31Q9Y3C7 131 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 PHLDA3Q9Y5J5 127 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 CCDC171Q6TFL3 1326 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 ADGBQ8N7X0 1667 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 TDRD6O60522 2096 aaKnown RBP3.61□□□□□ -1.83
PRKDC-209ENST00000540819 ADAMTSL1Q8N6G6 1762 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 PTPRTO14522 1441 aa3.61□□□□□ -1.83
PRKDC-209ENST00000540819 NOTCH3Q9UM47 2321 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 NUP214P35658 2090 aaPredicted RBP3.6□□□□□ -1.83
PRKDC-209ENST00000540819 A0A096LPI6 279 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 TMX2-CTNND1H3BSU7 103 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 DLEU1O43261 78 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 CGB3P0DN86 165 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 CGB7P0DN87 165 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 BCL2P10415 239 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 S100PP25815 95 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 NPY1RP25929 384 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 CCL20P78556 96 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 SLC25A34Q6PIV7 304 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 KTN1-AS1Q86SY8 53 aa3.6□□□□□ -1.83
PRKDC-209ENST00000540819 CROCCP2Q86T23 111 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms