RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TCF19Q9Y242 345 aa11.28□□□□□ -0.6
RTN3-210ENST00000540798 MAP1LC3B2A6NCE7 125 aa11.27□□□□□ -0.6
RTN3-210ENST00000540798 RPL31P62899 125 aaKnown RBP11.27□□□□□ -0.6
RTN3-210ENST00000540798 MAP1LC3BQ9GZQ8 125 aa11.27□□□□□ -0.6
RTN3-210ENST00000540798 GNG13Q9P2W3 67 aa11.27□□□□□ -0.6
RTN3-210ENST00000540798 KALRNO60229 2985 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 H3BQ15 152 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 M0R036 132 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 KLRB1Q12918 225 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 LYPD2Q6UXB3 125 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 ZNF714Q96N38 554 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 YPEL4Q96NS1 127 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 P2RX4Q99571 388 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 CTSZQ9UBR2 303 aa11.27□□□□□ -0.61
RTN3-210ENST00000540798 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.26□□□□□ -0.61
RTN3-210ENST00000540798 B9A039 149 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 MAS1LP35410 378 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 DLX6P56179 175 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 C20orf24Q9BUV8 137 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 PRDM13Q9H4Q3 707 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 TLN1Q9Y490 2541 aaKnown RBP11.26□□□□□ -0.61
RTN3-210ENST00000540798 CTXND1A0A1B0GTU2 59 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 RRHO14718 337 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 HRASP01112 189 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 CD3EP07766 207 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 FGF8P55075 233 aaPredicted RBP11.26□□□□□ -0.61
RTN3-210ENST00000540798 RPS16P62249 146 aaKnown RBP11.26□□□□□ -0.61
RTN3-210ENST00000540798 FAM90A2PQ658T7 463 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 CCL17Q92583 94 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 HIST1H2BAQ96A08 127 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 ARFGEF3Q5TH69 2177 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 A0A087X0M5 115 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 A0A1B0GX30 115 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 hCG_1809904A0A1W2PP81 198 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 A0A1W2PR64 198 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 A0A1W2PRV1 198 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 CD1BP29016 333 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 HSPE1P61604 102 aaKnown RBP11.26□□□□□ -0.61
RTN3-210ENST00000540798 LINC00311Q8N616 119 aa11.26□□□□□ -0.61
RTN3-210ENST00000540798 YLPM1P49750 1951 aaKnown RBP11.25□□□□□ -0.61
RTN3-210ENST00000540798 ADGRG4Q8IZF6 3080 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 A0A087WWC5 75 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 C17orf112F2Z3M2 114 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 MPDU1O75352 247 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 CCL3L1P16619 93 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 CHRNB4P30926 498 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 DLK1P80370 383 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 GAMTQ14353 236 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 FFAR4Q5NUL3 377 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 REC114Q7Z4M0 266 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 DYNLRB1Q9NP97 96 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 SLC39A9Q9NUM3 307 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 ZNRD1Q9P1U0 126 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 VAX2Q9UIW0 290 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 ZNF257Q9Y2Q1 563 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 PUS1Q9Y606 427 aaKnown RBP eCLIP11.25□□□□□ -0.61
RTN3-210ENST00000540798 NDUFB3O43676 98 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 FSTL3O95633 263 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 LOXP28300 417 aaPredicted RBP11.25□□□□□ -0.61
RTN3-210ENST00000540798 ERVFRD-1P60508 538 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 FAM71F2Q6NXP2 309 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 SLC35E3Q7Z769 313 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 OR10G9Q8NGN4 311 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 OR10G7Q8NGN6 311 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 TCEAL7Q9BRU2 100 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 HEYLQ9NQ87 328 aaPredicted RBP11.25□□□□□ -0.61
RTN3-210ENST00000540798 PCNX1Q96RV3 2341 aa11.25□□□□□ -0.61
RTN3-210ENST00000540798 SEC14L6B5MCN3 397 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 SIAH2O43255 324 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 LRRC10Q5BKY1 277 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 PDZD11Q5EBL8 140 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 RAB39BQ96DA2 213 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 METTL1Q9UBP6 276 aaKnown RBP11.24□□□□□ -0.61
RTN3-210ENST00000540798 CHD8Q9HCK8 2581 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 ZFP92A6NM28 416 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 UPK2O00526 184 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 IFNA10P01566 189 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 MT-ND4LP03901 98 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 DDTP30046 118 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 RTL8BQ17RB0 113 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 OR13D1Q8NGV5 346 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 LHX4Q969G2 390 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 SLC35D1Q9NTN3 355 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 IGHV1-69-2A0A0G2JMI3 117 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 SRRM4A7MD48 611 aaKnown RBP11.24□□□□□ -0.61
RTN3-210ENST00000540798 DVL1O14640 695 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 PLAUP00749 431 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 IFNA1P01562 189 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 IGKV1-16P04430 117 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 TMEM249Q2WGJ8 235 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 TREML4Q6UXN2 200 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 TVP23CQ96ET8 276 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 C1orf159Q96HA4 380 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 BET1LQ9NYM9 111 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 PRNDQ9UKY0 176 aa11.24□□□□□ -0.61
RTN3-210ENST00000540798 ZNF137PP52743 207 aa11.23□□□□□ -0.61
RTN3-210ENST00000540798 TMEM155Q4W5P6 130 aa11.23□□□□□ -0.61
RTN3-210ENST00000540798 ABHD12Q8N2K0 398 aa11.23□□□□□ -0.61
RTN3-210ENST00000540798 ZNF709Q8N972 641 aa11.23□□□□□ -0.61
RTN3-210ENST00000540798 OR5AN1Q8NGI8 311 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms