RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 HLA-GP17693 338 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 APOC4P55056 127 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 AQP4P55087 323 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 PMS2P11Q13670 270 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 MSMO1Q15800 293 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 TIMM50Q3ZCQ8 353 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 RBPMS2Q6ZRY4 209 aaKnown RBP10.09□□□□□ -0.79
SS18-204ENST00000539244 ZNF367Q7RTV3 350 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 LYG2Q86SG7 212 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 ZNF502Q8TBZ5 544 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 ZNF436Q9C0F3 470 aaPredicted RBP10.09□□□□□ -0.79
SS18-204ENST00000539244 C5orf66Q9H5L9 145 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 TAS2R8Q9NYW2 309 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 UFC1Q9Y3C8 167 aa10.09□□□□□ -0.79
SS18-204ENST00000539244 KIR2DL5BA0A0G2JN68 375 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 KIR2DL5BA0A0G2JPC4 375 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 UBE2CO00762 179 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 SPRY2O43597 315 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 SCGNO76038 276 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 FGF2P09038 288 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 DEFA4P12838 97 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 MYOD1P15172 320 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 POU2AF1Q16633 256 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 ZNF585BQ52M93 769 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 KIR2DL5AQ8N109 375 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 OR2C3Q8N628 320 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 KIR2DL5BQ8NHK3 375 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 NUDCD2Q8WVJ2 157 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 SRSF8Q9BRL6 282 aaKnown RBP10.08□□□□□ -0.8
SS18-204ENST00000539244 AIFM2Q9BRQ8 373 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 ANXA10Q9UJ72 324 aa10.08□□□□□ -0.8
SS18-204ENST00000539244 IGLC7A0M8Q6 106 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 TMEM235A6NFC5 223 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 TSPAN4O14817 238 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 RBFOX2O43251 390 aaKnown RBP eCLIP10.07□□□□□ -0.8
SS18-204ENST00000539244 SSX5O60225 188 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 REG1AP05451 166 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 PTBP1P26599 531 aaKnown RBP eCLIP10.07□□□□□ -0.8
SS18-204ENST00000539244 GPR183P32249 361 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 OR2B8PP59922 312 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 SSX9Q7RTT3 188 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 SLC38A6Q8IZM9 456 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 TMEM190Q8WZ59 177 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 THYN1Q9P016 225 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 KLK5Q9Y337 293 aaPredicted RBP10.07□□□□□ -0.8
SS18-204ENST00000539244 DNAH10Q8IVF4 4471 aa10.07□□□□□ -0.8
SS18-204ENST00000539244 NOTOA8MTQ0 251 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 TAS2R31P59538 309 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 GNG2P59768 71 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 DEFB135Q30KP9 77 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 ODF3L2Q3SX64 289 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 PLET1Q6UQ28 207 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 ZBTB34Q8NCN2 500 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 VN1R17PQ8TDU5 208 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 NRG4Q8WWG1 115 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 RNF183Q96D59 192 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 GPHA2Q96T91 129 aa10.06□□□□□ -0.8
SS18-204ENST00000539244 UPK2O00526 184 aa10.05□□□□□ -0.8
SS18-204ENST00000539244 TGOLN2O43493 480 aa10.05□□□□□ -0.8
SS18-204ENST00000539244 C22orf42Q6IC83 251 aa10.05□□□□□ -0.8
SS18-204ENST00000539244 SPAG16Q8N0X2 631 aa10.05□□□□□ -0.8
SS18-204ENST00000539244 ATP6V0BQ99437 205 aa10.05□□□□□ -0.8
SS18-204ENST00000539244 HRASLSQ9HDD0 168 aa10.05□□□□□ -0.8
SS18-204ENST00000539244 DAZ1Q9NQZ3 744 aaKnown RBP10.05□□□□□ -0.8
SS18-204ENST00000539244 CCL28Q9NRJ3 127 aa10.05□□□□□ -0.8
SS18-204ENST00000539244 UBQLN2Q9UHD9 624 aa10.05□□□□□ -0.8
SS18-204ENST00000539244 IGHV3-35A0A0C4DH35 117 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 TNFSF12O43508 249 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 HPRT1P00492 218 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 NQO2P16083 231 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 FGF9P31371 208 aaPredicted RBP10.04□□□□□ -0.8
SS18-204ENST00000539244 LGALS9CQ6DKI2 356 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 THOC7Q6I9Y2 204 aaKnown RBP10.04□□□□□ -0.8
SS18-204ENST00000539244 LAMTOR1Q6IAA8 161 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 ZNF773Q6PK81 442 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 TMEM217Q8N7C4 229 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 STPG3Q8N7X2 389 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 OR13F1Q8NGS4 319 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 SECTM1Q8WVN6 248 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 QTRT1Q9BXR0 403 aaKnown RBP10.04□□□□□ -0.8
SS18-204ENST00000539244 BLOC1S6Q9UL45 172 aa10.04□□□□□ -0.8
SS18-204ENST00000539244 TRAV3A0A0B4J244 114 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 NDUFA4O00483 81 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 CYB5BO43169 146 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 PPYP01298 95 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 FCGR2CP31995 323 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 CATR1Q13166 79 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 SPSB3Q6PJ21 355 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 HSD17B13Q7Z5P4 300 aaPredicted RBP10.03□□□□□ -0.8
SS18-204ENST00000539244 TPRA1Q86W33 373 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 RPP25LQ8N5L8 163 aaKnown RBP10.03□□□□□ -0.8
SS18-204ENST00000539244 GDPD1Q8N9F7 314 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 BEST4Q8NFU0 473 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 GALNT14Q96FL9 552 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 BSCL2Q96G97 398 aaPredicted RBP10.03□□□□□ -0.8
SS18-204ENST00000539244 COMMD5Q9GZQ3 224 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 PLEKHA2Q9HB19 425 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 DNAH6Q9C0G6 4158 aa10.03□□□□□ -0.8
SS18-204ENST00000539244 VPS13DQ5THJ4 4388 aa10.02□□□□□ -0.81
SS18-204ENST00000539244 SMIM30A4D0T7 59 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms