RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 C15orf32Q32M92 178 aa8.84□□□□□ -0.99
RTN3-209ENST00000538995 THOC7Q6I9Y2 204 aaKnown RBP8.84□□□□□ -0.99
RTN3-209ENST00000538995 C11orf87Q6NUJ2 197 aa8.84□□□□□ -0.99
RTN3-209ENST00000538995 LPCAT3Q6P1A2 487 aa8.84□□□□□ -0.99
RTN3-209ENST00000538995 SNX29P2Q8IUI4 249 aa8.84□□□□□ -0.99
RTN3-209ENST00000538995 LYSMD2Q8IV50 215 aa8.84□□□□□ -0.99
RTN3-209ENST00000538995 FYTTD1Q96QD9 318 aaKnown RBP8.84□□□□□ -0.99
RTN3-209ENST00000538995 NAA50Q9GZZ1 169 aaKnown RBP8.84□□□□□ -0.99
RTN3-209ENST00000538995 FXYD6Q9H0Q3 95 aa8.84□□□□□ -0.99
RTN3-209ENST00000538995 FAM212BQ9NTI7 297 aaPredicted RBP8.84□□□□□ -0.99
RTN3-209ENST00000538995 TMEM140Q9NV12 185 aa8.84□□□□□ -0.99
RTN3-209ENST00000538995 STAB2Q8WWQ8 2551 aa8.84□□□□□ -0.99
RTN3-209ENST00000538995 MARCH11A6NNE9 402 aa8.83□□□□□ -1
RTN3-209ENST00000538995 E7EUB6 86 aa8.83□□□□□ -1
RTN3-209ENST00000538995 H0Y980 276 aa8.83□□□□□ -1
RTN3-209ENST00000538995 BMPR1BO00238 502 aa8.83□□□□□ -1
RTN3-209ENST00000538995 UPK2O00526 184 aa8.83□□□□□ -1
RTN3-209ENST00000538995 OR2J3O76001 311 aa8.83□□□□□ -1
RTN3-209ENST00000538995 RLN1P04808 185 aa8.83□□□□□ -1
RTN3-209ENST00000538995 CTRB1P17538 263 aa8.83□□□□□ -1
RTN3-209ENST00000538995 HLA-DMAP28067 261 aa8.83□□□□□ -1
RTN3-209ENST00000538995 ALDH3B2P48448 385 aa8.83□□□□□ -1
RTN3-209ENST00000538995 OR2B8PP59922 312 aa8.83□□□□□ -1
RTN3-209ENST00000538995 GPR107Q5VW38 600 aa8.83□□□□□ -1
RTN3-209ENST00000538995 CTRB2Q6GPI1 263 aa8.83□□□□□ -1
RTN3-209ENST00000538995 IL34Q6ZMJ4 242 aa8.83□□□□□ -1
RTN3-209ENST00000538995 HSD17B13Q7Z5P4 300 aaPredicted RBP8.83□□□□□ -1
RTN3-209ENST00000538995 GPR141Q7Z602 305 aa8.83□□□□□ -1
RTN3-209ENST00000538995 DMBX1Q8NFW5 382 aa8.83□□□□□ -1
RTN3-209ENST00000538995 C15orf40Q8WUR7 153 aa8.83□□□□□ -1
RTN3-209ENST00000538995 DGCR14Q96DF8 476 aaKnown RBP8.83□□□□□ -1
RTN3-209ENST00000538995 RSRP1Q9BUV0 290 aa8.83□□□□□ -1
RTN3-209ENST00000538995 COMMD5Q9GZQ3 224 aa8.83□□□□□ -1
RTN3-209ENST00000538995 PEMTQ9UBM1 199 aa8.83□□□□□ -1
RTN3-209ENST00000538995 FAM25AB3EWG3 89 aa8.82□□□□□ -1
RTN3-209ENST00000538995 FAM25CB3EWG5 89 aa8.82□□□□□ -1
RTN3-209ENST00000538995 FAM25GB3EWG6 89 aa8.82□□□□□ -1
RTN3-209ENST00000538995 AREGP15514 252 aa8.82□□□□□ -1
RTN3-209ENST00000538995 TBPP20226 339 aa8.82□□□□□ -1
RTN3-209ENST00000538995 UCP3P55916 312 aa8.82□□□□□ -1
RTN3-209ENST00000538995 TSPAN5P62079 268 aa8.82□□□□□ -1
RTN3-209ENST00000538995 SLC38A6Q8IZM9 456 aa8.82□□□□□ -1
RTN3-209ENST00000538995 OR2K2Q8NGT1 345 aa8.82□□□□□ -1
RTN3-209ENST00000538995 FANCD2OSQ96PS1 177 aa8.82□□□□□ -1
RTN3-209ENST00000538995 QTRT1Q9BXR0 403 aaKnown RBP8.82□□□□□ -1
RTN3-209ENST00000538995 FBXL7Q9UJT9 491 aa8.82□□□□□ -1
RTN3-209ENST00000538995 RYR3Q15413 4870 aa8.81□□□□□ -1
RTN3-209ENST00000538995 IGLV11-55A0A075B6I3 123 aa8.81□□□□□ -1
RTN3-209ENST00000538995 IGLC7A0M8Q6 106 aa8.81□□□□□ -1
RTN3-209ENST00000538995 CGB1A6NKQ9 187 aa8.81□□□□□ -1
RTN3-209ENST00000538995 CYB5BO43169 146 aa8.81□□□□□ -1
RTN3-209ENST00000538995 GGCTO75223 188 aaKnown RBP8.81□□□□□ -1
RTN3-209ENST00000538995 CSN3P07498 182 aa8.81□□□□□ -1
RTN3-209ENST00000538995 DEFA4P12838 97 aa8.81□□□□□ -1
RTN3-209ENST00000538995 LCN12Q6JVE5 192 aa8.81□□□□□ -1
RTN3-209ENST00000538995 Q8N402 240 aa8.81□□□□□ -1
RTN3-209ENST00000538995 FCAMRQ8WWV6 532 aa8.81□□□□□ -1
RTN3-209ENST00000538995 EEF1AKMT3Q96AZ1 226 aa8.81□□□□□ -1
RTN3-209ENST00000538995 CXorf58Q96LI9 332 aa8.81□□□□□ -1
RTN3-209ENST00000538995 WWC2-AS2Q96NR7 200 aa8.81□□□□□ -1
RTN3-209ENST00000538995 BCL7BQ9BQE9 202 aa8.81□□□□□ -1
RTN3-209ENST00000538995 U3KQK5 164 aa8.81□□□□□ -1
RTN3-209ENST00000538995 TRBV7-1A0A0A6YYK4 115 aa8.8□□□□□ -1
RTN3-209ENST00000538995 TRAV3A0A0B4J244 114 aa8.8□□□□□ -1
RTN3-209ENST00000538995 LGALS9O00182 355 aa8.8□□□□□ -1
RTN3-209ENST00000538995 MYOD1P15172 320 aa8.8□□□□□ -1
RTN3-209ENST00000538995 PTBP1P26599 531 aaKnown RBP eCLIP8.8□□□□□ -12e-11■■■□□ 17.6
RTN3-209ENST00000538995 LPAR6P43657 344 aa8.8□□□□□ -1
RTN3-209ENST00000538995 ZNF585BQ52M93 769 aa8.8□□□□□ -1
RTN3-209ENST00000538995 RNASE10Q5GAN6 216 aaKnown RBP8.8□□□□□ -1
RTN3-209ENST00000538995 C19orf35Q6ZS72 473 aa8.8□□□□□ -1
RTN3-209ENST00000538995 HAPLN4Q86UW8 402 aa8.8□□□□□ -1
RTN3-209ENST00000538995 ARRDC1Q8N5I2 433 aa8.8□□□□□ -1
RTN3-209ENST00000538995 GDPD1Q8N9F7 314 aa8.8□□□□□ -1
RTN3-209ENST00000538995 OR1L8Q8NGR8 309 aa8.8□□□□□ -1
RTN3-209ENST00000538995 RAB2BQ8WUD1 216 aa8.8□□□□□ -1
RTN3-209ENST00000538995 ZNF486Q96H40 463 aaPredicted RBP8.8□□□□□ -1
RTN3-209ENST00000538995 CCDC140Q96MF4 163 aa8.8□□□□□ -1
RTN3-209ENST00000538995 TSC22D3Q99576 134 aa8.8□□□□□ -1
RTN3-209ENST00000538995 THYN1Q9P016 225 aa8.8□□□□□ -1
RTN3-209ENST00000538995 EXTL2Q9UBQ6 330 aa8.8□□□□□ -1
RTN3-209ENST00000538995 MTFP1Q9UDX5 166 aa8.8□□□□□ -1
RTN3-209ENST00000538995 DMRT1Q9Y5R6 373 aa8.8□□□□□ -1
RTN3-209ENST00000538995 A8MZ25 164 aa8.79□□□□□ -1
RTN3-209ENST00000538995 SNAPC5O75971 98 aa8.79□□□□□ -1
RTN3-209ENST00000538995 NDUFB8O95169 186 aa8.79□□□□□ -1
RTN3-209ENST00000538995 KRASP01116 189 aa8.79□□□□□ -1
RTN3-209ENST00000538995 IFNA6P05013 189 aa8.79□□□□□ -1
RTN3-209ENST00000538995 REG1AP05451 166 aa8.79□□□□□ -1
RTN3-209ENST00000538995 TRAPPC2P0DI81 140 aa8.79□□□□□ -1
RTN3-209ENST00000538995 TRAPPC2BP0DI82 140 aa8.79□□□□□ -1
RTN3-209ENST00000538995 ARL3P36405 182 aa8.79□□□□□ -1
RTN3-209ENST00000538995 MECP2P51608 486 aaKnown RBP8.79□□□□□ -1
RTN3-209ENST00000538995 RND3P61587 244 aa8.79□□□□□ -1
RTN3-209ENST00000538995 MRPS10P82664 201 aaKnown RBP8.79□□□□□ -1
RTN3-209ENST00000538995 SSBP1Q04837 148 aaKnown RBP8.79□□□□□ -1
RTN3-209ENST00000538995 PHLDA2Q53GA4 152 aa8.79□□□□□ -1
RTN3-209ENST00000538995 TBC1D26Q86UD7 250 aa8.79□□□□□ -1
RTN3-209ENST00000538995 GPHB5Q86YW7 130 aa8.79□□□□□ -1
RTN3-209ENST00000538995 SGPP2Q8IWX5 399 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms