RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 IGHV1-24A0A0C4DH33 117 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 hADV38S2A0JD32 116 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 TNFSF11O14788 317 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 SLC31A1O15431 190 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 CISD3P0C7P0 127 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 SMIM13P0DJ93 91 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 ARL3P36405 182 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 KIR2DL2P43627 348 aaPredicted RBP10.37□□□□□ -0.75
USP3-203ENST00000538686 CEACAM16Q2WEN9 425 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 SPTSSAQ969W0 71 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 TRIB1Q96RU8 372 aa10.37□□□□□ -0.75
USP3-203ENST00000538686 YTHDF2Q9Y5A9 579 aaKnown RBP10.37□□□□□ -0.75
USP3-203ENST00000538686 IGKV1-27A0A075B6S5 117 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 C17orf51A8MQB3 221 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 CA1P00915 261 aaPredicted RBP10.36□□□□□ -0.75
USP3-203ENST00000538686 CELA3AP09093 270 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 GCHFRP30047 84 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 CDAP32320 146 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 TCL1AP56279 114 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 SLC35B1P78383 322 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 MFAP5Q13361 173 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 PKIBQ9C010 78 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 SPANXA1Q9NS26 97 aa10.36□□□□□ -0.75
USP3-203ENST00000538686 IGKV1-12A0A0C4DH73 117 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 A1L4Q6 167 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 C21orf140B9A014 251 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 IGKV1D-12P01611 117 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 C8orf86Q6ZUL3 223 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 FOXL2NBQ6ZUU3 175 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 OR10G6Q8NH81 332 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 SERTAD4Q9NUC0 356 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 RABAC1Q9UI14 185 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 KBTBD11-OT1A0A1B0GTJ5 212 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 M0R135 149 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 FAM87AP0C7U9 286 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 GPR12P47775 334 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 RPL8P62917 257 aaKnown RBP10.35□□□□□ -0.75
USP3-203ENST00000538686 SRSF6Q13247 344 aaKnown RBP10.35□□□□□ -0.75
USP3-203ENST00000538686 LYSMD4Q5XG99 296 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 Q8N7P7 452 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 NHLRC2Q8NBF2 726 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 LRRC29Q8WV35 223 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 CACNG8Q8WXS5 425 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 ZNF799Q96GE5 643 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 ADTRPQ96IZ2 230 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 SPAG8Q99932 426 aaPredicted RBP10.35□□□□□ -0.75
USP3-203ENST00000538686 RNASE7Q9H1E1 156 aaKnown RBP10.35□□□□□ -0.75
USP3-203ENST00000538686 TBC1D29Q9UFV1 150 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 KCNS2Q9ULS6 477 aa10.35□□□□□ -0.75
USP3-203ENST00000538686 TRBV6-6A0A0A6YYG2 114 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 C5orf63A6NC05 138 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 ZNF716A6NP11 495 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 VWC2LB2RUY7 222 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 NPIPB11E5RHQ5 1161 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 TLX3O43711 291 aaPredicted RBP10.34□□□□□ -0.75
USP3-203ENST00000538686 WISP1O95388 367 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 FGF6P10767 208 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 ODF1Q14990 250 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 TMEM42Q69YG0 159 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 PQLC2Q6ZP29 291 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 BOD1L2Q8IYS8 172 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 OR52E5Q8NH55 327 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 ZNF502Q8TBZ5 544 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.34□□□□□ -0.75
USP3-203ENST00000538686 MYO7BQ6PIF6 2116 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 KLF7O75840 302 aaPredicted RBP10.34□□□□□ -0.75
USP3-203ENST00000538686 IGHV3-7P01780 117 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 DEFA4P12838 97 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 MFAP2P55001 183 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 EDDM3BP56851 147 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 FBXW4P57775 412 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 KLRD1Q13241 179 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 FXYD3Q14802 87 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 ZNF77Q15935 545 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 PDLIM3Q53GG5 364 aaPredicted RBP10.34□□□□□ -0.75
USP3-203ENST00000538686 PCSK4Q6UW60 755 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 TEX45Q8NA69 505 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 NEU4Q8WWR8 484 aaPredicted RBP10.34□□□□□ -0.75
USP3-203ENST00000538686 RAB37Q96AX2 223 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 HIF1ANQ9NWT6 349 aa10.34□□□□□ -0.75
USP3-203ENST00000538686 IGKV1-6A0A0C4DH72 117 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 A0A1W2PRE2 83 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 SYNGR1O43759 233 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 NEURL1O76050 574 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 SPINK8P0C7L1 97 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 PLA2G5P39877 138 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 SUMO3P55854 103 aaPredicted RBP10.33□□□□□ -0.76
USP3-203ENST00000538686 RHBDD2Q6NTF9 364 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 FAM231DQ6ZW35 169 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 OOSP2Q86WS3 158 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 SFTPA2Q8IWL1 248 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 SFTPA1Q8IWL2 248 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 PRR22Q8IZ63 422 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 FGFRL1Q8N441 504 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 RNF183Q96D59 192 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 URB1-AS1Q96HZ7 61 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 TMEM167BQ9NRX6 74 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 LOXL2Q9Y4K0 774 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 WNT6Q9Y6F9 365 aa10.33□□□□□ -0.76
USP3-203ENST00000538686 A0A1B0GW15 77 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms