RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 IFNA5P01569 189 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 GYPAP02724 150 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 DDTP30046 118 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 ZNF134P52741 427 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 SSX9Q7RTT3 188 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 OR5T1Q8NG75 326 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 RCC1LQ96I51 464 aaKnown RBP8.86□□□□□ -0.99
CLIP1-210ENST00000538120 HIPK2Q9H2X6 1198 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 RBKSQ9H477 322 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 CALYQ9NYX4 217 aa8.86□□□□□ -0.99
CLIP1-210ENST00000538120 NBEAQ8NFP9 2946 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 TRAV1-1A0A0B4J248 108 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 YPEL1O60688 119 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 S1PR2O95136 353 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 CLDN1O95832 211 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 NDUFB7P17568 137 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 ELLP55199 621 aaPredicted RBP8.85□□□□□ -0.99
CLIP1-210ENST00000538120 ZNF816Q0VGE8 651 aaPredicted RBP8.85□□□□□ -0.99
CLIP1-210ENST00000538120 ZNF66Q6ZN08 573 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 FAM216BQ8N7L0 139 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 OR10G4Q8NGN3 311 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 OR4X1Q8NH49 305 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 YPEL2Q96QA6 119 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 DIRC2Q96SL1 478 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 PLCE1Q9P212 2302 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 B4DEV8 164 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 DFFBO76075 338 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 G6PCP35575 357 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 ARL3P36405 182 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 DPPA3Q6W0C5 159 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 ST6GALNAC3Q8NDV1 305 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 RAB40CQ96S21 281 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 TMEM140Q9NV12 185 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 OR6C3Q9NZP0 311 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 GNG12Q9UBI6 72 aa8.85□□□□□ -0.99
CLIP1-210ENST00000538120 SYNGR2O43760 224 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 IGHV3-7P01780 117 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 C1QTNF9P0C862 333 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 PKIAP61925 76 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 CATR1Q13166 79 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 LBHQ53QV2 105 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-210ENST00000538120 NCR3LG1Q68D85 454 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 ZNF525Q8N782 197 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 SCGB1C1Q8TD33 95 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 IFI27L2Q9H2X8 130 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 TMEM242Q9NWH2 141 aa8.84□□□□□ -0.99
CLIP1-210ENST00000538120 POLR3KQ9Y2Y1 108 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-210ENST00000538120 DSCAMO60469 2012 aa8.84□□□□□ -1
CLIP1-210ENST00000538120 SMCO3A2RU48 225 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 FCN3O75636 299 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 KRASP01116 189 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 IGKV1D-33P01593 117 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 IGKV1-33P01594 117 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 IRF2P14316 349 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 TNFRSF1AP19438 455 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 DUTP33316 252 aaKnown RBP8.83□□□□□ -1
CLIP1-210ENST00000538120 CDKN1BP46527 198 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 PNRC1Q12796 327 aaPredicted RBP8.83□□□□□ -1
CLIP1-210ENST00000538120 CDSNQ15517 529 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 ADIRFQ15847 76 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 HSD17B10Q99714 261 aaKnown RBP8.83□□□□□ -1
CLIP1-210ENST00000538120 FAM234AQ9H0X4 552 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 PSENENQ9NZ42 101 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 CACNA1DQ01668 2161 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 TRBV24-1A0A075B6N3 115 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 KBTBD11-OT1A0A1B0GTJ5 212 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 EREGO14944 169 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 CLDN14O95500 239 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 GZMBP10144 247 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 GPR12P47775 334 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 CD81P60033 236 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 PRSS8Q16651 343 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 FBXL19-AS1Q494R0 122 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 C16orf82Q7Z2V1 217 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 TCTEX1D1Q8N7M0 179 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 LINC01560Q8TB33 94 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 MBD3L1Q8WWY6 194 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 RNASE6Q93091 150 aaKnown RBP8.83□□□□□ -1
CLIP1-210ENST00000538120 LEAP2Q969E1 77 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 ELOVL1Q9BW60 279 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 SEPSECSQ9HD40 501 aaKnown RBP8.83□□□□□ -1
CLIP1-210ENST00000538120 NGBQ9NPG2 151 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 CLN8Q9UBY8 286 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 ICE1Q9Y2F5 2266 aa8.83□□□□□ -1
CLIP1-210ENST00000538120 MAP1LC3B2A6NCE7 125 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 FAM90A27PA6NNH2 459 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 ADARB2-AS1A8MUL3 147 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 TSTD3H0UI37 97 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 CCL21O00585 134 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 ITGB1BP1O14713 200 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 TNFRSF13BO14836 293 aaPredicted RBP8.82□□□□□ -1
CLIP1-210ENST00000538120 TGFAP01135 160 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 AMBPP02760 352 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 SNRPCP09234 159 aaKnown RBP8.82□□□□□ -1
CLIP1-210ENST00000538120 ADORA2A-AS1P86434 159 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 RPL39P5Q59GN2 51 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 CT45A1Q5HYN5 189 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 SPANXN5Q5MJ07 72 aa8.82□□□□□ -1
CLIP1-210ENST00000538120 RPP25LQ8N5L8 163 aaKnown RBP8.82□□□□□ -1
CLIP1-210ENST00000538120 OR10A7Q8NGE5 316 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms