RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 R3HDM4Q96D70 268 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 ADTRPQ96IZ2 230 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 RHOVQ96L33 236 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 YPEL2Q96QA6 119 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 OR2J1Q9GZK6 312 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 MRPL18Q9H0U6 180 aaKnown RBP5.26□□□□□ -1.57
SYNE1-233ENST00000535896 OR51B6Q9H340 312 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 PPP1R14DQ9NXH3 145 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 SLC25A10Q9UBX3 287 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-233ENST00000535896 CLN8Q9UBY8 286 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 LSM4Q9Y4Z0 139 aaKnown RBP5.26□□□□□ -1.57
SYNE1-233ENST00000535896 TRAPPC1Q9Y5R8 145 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 TANC2Q9HCD6 1990 aa5.26□□□□□ -1.57
SYNE1-233ENST00000535896 CFAP46Q8IYW2 2715 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 COL6A6A6NMZ7 2263 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 KALRNO60229 2985 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 YLPM1P49750 1951 aaKnown RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 TRGV10A0A0A0MS01 117 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 TRGV5A0A0B4J1U4 118 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 FAM166BA8MTA8 275 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 C17orf98A8MV24 154 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 F8W735 103 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 C15orf65H3BRN8 121 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 M0R143 59 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 F2RL2O00254 374 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 PSPNO60542 156 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 MMP23AO75900 390 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 IGLV1-40P01703 118 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 CELA3AP09093 270 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 RD3LP0DJH9 198 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 DUTP33316 252 aaKnown RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 TIMP3P35625 211 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 VDAC2P45880 294 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 GPR12P47775 334 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 GABRA2P47869 451 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 RPL29P47914 159 aaKnown RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 CCL11P51671 97 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 BRWD1-AS2P59051 145 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 TPPP2P59282 170 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 GNB1P62873 340 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 RPL30P62888 115 aaKnown RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF816Q0VGE8 651 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 PSG7Q13046 419 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 GUSBP1Q15486 140 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 POU2AF1Q16633 256 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 FAM78BQ5VT40 261 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 MBNL2Q5VZF2 373 aaKnown RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 WDR73Q6P4I2 378 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 TEX38Q6PEX7 206 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 C5orf24Q7Z6I8 188 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 OR4S2Q8NH73 311 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 SLC25A40Q8TBP6 338 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 TMEM190Q8WZ59 177 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 C5orf30Q96GV9 206 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 COQ2Q96H96 371 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 EAF1Q96JC9 268 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-233ENST00000535896 UHRF2Q96PU4 802 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 C20orf144Q9BQM9 153 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 ELOVL1Q9BW60 279 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 GGTLC1Q9BX51 225 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 KRTAP4-9Q9BYQ8 210 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 NPVFQ9HCQ7 196 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 FKBP11Q9NYL4 201 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 ELOVL5Q9NYP7 299 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 IL36BQ9NZH7 164 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 CLCF1Q9UBD9 225 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 DSCAML1Q8TD84 2053 aa5.25□□□□□ -1.57
SYNE1-233ENST00000535896 DNAJC13O75165 2243 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 BOD1L1Q8NFC6 3051 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 BSNQ9UPA5 3926 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 A0A1B0GV90 55 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 C15orf61A6NNL5 157 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 MGST3O14880 152 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 HMGB3O15347 200 aaKnown RBP5.24□□□□□ -1.57
SYNE1-233ENST00000535896 RBMXL2O75526 392 aaKnown RBP5.24□□□□□ -1.57
SYNE1-233ENST00000535896 IGHG3P01860 377 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 NPPCP23582 126 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 Q0VG73 95 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 TMEM183BQ1AE95 376 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 C3orf36Q3SXR2 165 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 ZNF718Q3SXZ3 478 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 PRAMEF5Q5TYX0 476 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 PRAMEF6Q5VXH4 476 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 RASL11AQ6T310 242 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 IGFL2Q6UWQ7 119 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 IGFL3Q6UXB1 125 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 TOMM20LQ6UXN7 152 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 WDR82Q6UXN9 313 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 C11orf53Q8IXP5 236 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 GCSAMQ8N6F7 178 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 NECAP1Q8NC96 275 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 FDCSPQ8NFU4 85 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 OR10G8Q8NGN5 311 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 OR4A16Q8NH70 328 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 SGMS2Q8NHU3 365 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 CMTM2Q8TAZ6 248 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 KLF14Q8TD94 323 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-233ENST00000535896 SLC35E1Q96K37 410 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 NEU1Q99519 415 aa5.24□□□□□ -1.57
SYNE1-233ENST00000535896 QTRT1Q9BXR0 403 aaKnown RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms