RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.29■□□□□ 0.04
VPS28-207ENST00000526977 C1orf159Q96HA4 380 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 SIRPDQ9H106 197 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 FBXO7Q9Y3I1 522 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 INSIG2Q9Y5U4 225 aa15.29■□□□□ 0.04
VPS28-207ENST00000526977 IGLV1-47P01700 117 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 IL3RAP26951 378 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 POU2AF1Q16633 256 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 OR4A47Q6IF82 309 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 FAM71F2Q6NXP2 309 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 COMMD1Q8N668 190 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 OR11H6Q8NGC7 330 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 RSG1Q9BU20 258 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 SCRT1Q9BWW7 348 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 PARD6GQ9BYG4 376 aaPredicted RBP15.28■□□□□ 0.04
VPS28-207ENST00000526977 LPAR2Q9HBW0 351 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 SIRT7Q9NRC8 400 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 ARHGAP32A7KAX9 2087 aa15.28■□□□□ 0.04
VPS28-207ENST00000526977 TOX4O94842 621 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 MSMBP08118 114 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 OR8U8P0C7N1 319 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 ZNF137PP52743 207 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 HLA-DRB5Q30154 266 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 VMO1Q7Z5L0 202 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 ZNF429Q86V71 674 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 PNKDQ8N490 385 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 WDR61Q9GZS3 305 aaKnown RBP15.27■□□□□ 0.04
VPS28-207ENST00000526977 SLC35D1Q9NTN3 355 aa15.27■□□□□ 0.04
VPS28-207ENST00000526977 C9JQL5 133 aa15.27■□□□□ 0.03
VPS28-207ENST00000526977 HRASP01112 189 aa15.27■□□□□ 0.03
VPS28-207ENST00000526977 IGKV1-16P04430 117 aa15.27■□□□□ 0.03
VPS28-207ENST00000526977 RPS16P62249 146 aaKnown RBP15.27■□□□□ 0.03
VPS28-207ENST00000526977 PAX8Q06710 450 aa15.27■□□□□ 0.03
VPS28-207ENST00000526977 ATP6V1FQ16864 119 aa15.27■□□□□ 0.03
VPS28-207ENST00000526977 AKR1C8PQ5T2L2 129 aa15.27■□□□□ 0.03
VPS28-207ENST00000526977 CARHSP1Q9Y2V2 147 aaKnown RBP15.27■□□□□ 0.03
VPS28-207ENST00000526977 VPS13CQ709C8 3753 aa15.27■□□□□ 0.03
VPS28-207ENST00000526977 F8W036 122 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 IL6RP08887 468 aaPredicted RBP15.26■□□□□ 0.03
VPS28-207ENST00000526977 COX7A1P24310 79 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 VDAC2P45880 294 aaPredicted RBP15.26■□□□□ 0.03
VPS28-207ENST00000526977 RTL8BQ17RB0 113 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 OR10P1Q8NGE3 313 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 ST6GALNAC6Q969X2 333 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 MRPL20Q9BYC9 149 aaKnown RBP15.26■□□□□ 0.03
VPS28-207ENST00000526977 AMMECR1Q9Y4X0 333 aaPredicted RBP15.26■□□□□ 0.03
VPS28-207ENST00000526977 MED13LQ71F56 2210 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 UNC79Q9P2D8 2635 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 SRRM4A7MD48 611 aaKnown RBP15.26■□□□□ 0.03
VPS28-207ENST00000526977 C15orf62A8K5M9 175 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 LY86O95711 162 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 DLX1P56177 255 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 GUCA2BQ16661 112 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 DHRS7BQ6IAN0 325 aaPredicted RBP15.26■□□□□ 0.03
VPS28-207ENST00000526977 SPSB3Q6PJ21 355 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 KRTAP1-3Q8IUG1 177 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 TAF15Q92804 592 aaKnown RBP eCLIP15.26■□□□□ 0.03
VPS28-207ENST00000526977 Q96MF0 132 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 FOXC2Q99958 501 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 PSMG3Q9BT73 122 aaPredicted RBP15.26■□□□□ 0.03
VPS28-207ENST00000526977 SEC11CQ9BY50 192 aa15.26■□□□□ 0.03
VPS28-207ENST00000526977 C15orf61A6NNL5 157 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 RNF223E7ERA6 249 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 BUB1B-PAK6H3BSN5 160 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 ARG1P05089 322 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 GATA3P23771 443 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 CCL20P78556 96 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 PINX1Q96BK5 328 aaKnown RBP15.25■□□□□ 0.03
VPS28-207ENST00000526977 PCGF1Q9BSM1 259 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 TMEM14BQ9NUH8 114 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 TCF19Q9Y242 345 aa15.25■□□□□ 0.03
VPS28-207ENST00000526977 FOXA2Q9Y261 457 aaPredicted RBP15.25■□□□□ 0.03
VPS28-207ENST00000526977 H2AFB1P0C5Y9 115 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 TAGLNQ01995 201 aaKnown RBP15.24■□□□□ 0.03
VPS28-207ENST00000526977 DIAPH2-AS1Q14236 149 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 GUK1Q16774 197 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 DPPA3Q6W0C5 159 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 LINC01356Q8N9X3 169 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 OR5AN1Q8NGI8 311 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 OR4P4Q8NGL7 312 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 HEYLQ9NQ87 328 aaPredicted RBP15.24■□□□□ 0.03
VPS28-207ENST00000526977 TRAV20A0A0B4J274 112 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 UBE2L5PA0A1B0GUS4 154 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 A0A1B0GV50 99 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 REG1BP48304 166 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 HSPE1P61604 102 aaKnown RBP15.24■□□□□ 0.03
VPS28-207ENST00000526977 HCP5Q6MZN7 132 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 PUSL1Q8N0Z8 303 aaKnown RBP15.24■□□□□ 0.03
VPS28-207ENST00000526977 SVBPQ8N300 66 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 TMEM147Q9BVK8 224 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 NKX6-2Q9C056 277 aaPredicted RBP15.24■□□□□ 0.03
VPS28-207ENST00000526977 HIPK2Q9H2X6 1198 aa15.24■□□□□ 0.03
VPS28-207ENST00000526977 H0YJW9 148 aa15.23■□□□□ 0.03
VPS28-207ENST00000526977 HTR1DP28221 377 aa15.23■□□□□ 0.03
VPS28-207ENST00000526977 SERF2P84101 59 aa15.23■□□□□ 0.03
VPS28-207ENST00000526977 PRB3Q04118 309 aaPredicted RBP15.23■□□□□ 0.03
VPS28-207ENST00000526977 CENPVQ7Z7K6 275 aaPredicted RBP15.23■□□□□ 0.03
VPS28-207ENST00000526977 CLCC1Q96S66 551 aa15.23■□□□□ 0.03
VPS28-207ENST00000526977 TBX15Q96SF7 602 aa15.23■□□□□ 0.03
VPS28-207ENST00000526977 RPRMQ9NS64 109 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms