RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ORM2P19652 201 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 CDK2P24941 298 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 OPRM1P35372 400 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 HSPA9P38646 679 aaKnown RBP2.19□□□□□ -2.06
CD44-223ENST00000526553 CXCR4P61073 352 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 APOFQ13790 326 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 OR8G1Q15617 311 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 SPIN4Q56A73 249 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 N4BP2L1Q5TBK1 243 aaPredicted RBP2.19□□□□□ -2.06
CD44-223ENST00000526553 LPCAT4Q643R3 524 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 LRP11Q86VZ4 500 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 C10orf67Q8IYJ2 551 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 EIF4E3Q8N5X7 224 aaKnown RBP2.19□□□□□ -2.06
CD44-223ENST00000526553 CCDC112Q8NEF3 446 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 JOSD2Q8TAC2 188 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 CMTM2Q8TAZ6 248 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 CD200R1Q8TD46 325 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 HAVCR2Q8TDQ0 301 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 TM2D3Q9BRN9 247 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 C1QTNF6Q9BXI9 259 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 MRPS26Q9BYN8 205 aaKnown RBP2.19□□□□□ -2.06
CD44-223ENST00000526553 DERL2Q9GZP9 239 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 MAP1LC3AQ9H492 121 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 HES4Q9HCC6 221 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 DNAJC12Q9UKB3 198 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 POLR1DQ9Y2S0 133 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 ZNF292O60281 2723 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 KMT2BQ9UMN6 2715 aaPredicted RBP2.19□□□□□ -2.06
CD44-223ENST00000526553 CHD8Q9HCK8 2581 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 THADAQ6YHU6 1953 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 SHROOM3Q8TF72 1996 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 ATG2BQ96BY7 2078 aa2.19□□□□□ -2.06
CD44-223ENST00000526553 DOCK6Q96HP0 2047 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 PKD1L2Q7Z442 2459 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 SPAG17Q6Q759 2223 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 FASNP49327 2511 aaKnown RBP2.18□□□□□ -2.06
CD44-223ENST00000526553 CHD6Q8TD26 2715 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 IGKV3D-11A0A0A0MRZ8 115 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 IGKV2-24A0A0C4DH68 120 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 IGKV1-12A0A0C4DH73 117 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 A0A1B0GU33 70 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 C5orf49A4QMS7 147 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 M0R036 132 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 LECT2O14960 151 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 SLC25A20O43772 301 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 SMIM24O75264 130 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 DEDDO75618 318 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 CPSF4O95639 269 aaKnown RBP2.18□□□□□ -2.06
CD44-223ENST00000526553 IGKV1D-12P01611 117 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 IL6P05231 212 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 OR4A8P0C604 315 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 ZNF708P17019 499 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 ATP6V0CP27449 155 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 CRABP1P29762 137 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 HPCAP84074 193 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 FABP5Q01469 135 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 TSPAN31Q12999 210 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 MESTQ5EB52 335 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 CD200R1LQ6Q8B3 271 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 ADM2Q7Z4H4 148 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 DCXRQ7Z4W1 244 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 OR5P3Q8WZ94 311 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 PTH2Q96A98 100 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 TMA16Q96EY4 203 aaKnown RBP2.18□□□□□ -2.06
CD44-223ENST00000526553 BOLA2Q9H3K6 86 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 ZNF230Q9UIE0 474 aaPredicted RBP2.18□□□□□ -2.06
CD44-223ENST00000526553 HDGFL3Q9Y3E1 203 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 ALG5Q9Y673 324 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 CFAP47Q6ZTR5 3102 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 OTOGLQ3ZCN5 2332 aa2.18□□□□□ -2.06
CD44-223ENST00000526553 FRYLO94915 3013 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 SEC16AO15027 2179 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 ANKRD11Q6UB99 2663 aaPredicted RBP2.17□□□□□ -2.06
CD44-223ENST00000526553 DNAH14Q0VDD8 3507 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 LINC00862A6NCI5 91 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 C21orf140B9A014 251 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 ACOX3O15254 700 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 DCTN3O75935 186 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 IL3P08700 152 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 CD7P09564 240 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 HRES1P13985 223 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 ACTBP60709 375 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 FGF12P61328 243 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 RPS24P62847 133 aaKnown RBP2.17□□□□□ -2.06
CD44-223ENST00000526553 ACTG1P63261 375 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 SLC35A2P78381 396 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 MRPS25P82663 173 aaKnown RBP2.17□□□□□ -2.06
CD44-223ENST00000526553 TMEM267Q0VDI3 215 aaPredicted RBP2.17□□□□□ -2.06
CD44-223ENST00000526553 ZNF141Q15928 474 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 BRD3OSQ6XYD6 125 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 ATP5L2Q7Z4Y8 100 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 SLC51BQ86UW2 128 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 ZFAND2AQ8N6M9 145 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 Q8NAQ8 132 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 OR8J2Q8NGG1 315 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 Q8WTZ3 238 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 RAB8BQ92930 207 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 TESCQ96BS2 214 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 MS4A6EQ96DS6 147 aa2.17□□□□□ -2.06
CD44-223ENST00000526553 SLC25A44Q96H78 314 aaPredicted RBP2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms