RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 GPATCH8Q9UKJ3 1502 aaKnown RBP0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 UBR2Q8IWV8 1755 aa0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 PHF3Q92576 2039 aaKnown RBP0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 TMEM131Q92545 1883 aa0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 SETD1AO15047 1707 aaKnown RBP0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 GRIN2AQ12879 1464 aa0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARHGAP23Q9P227 1491 aa0.41□□□□□ -2.34
RNU4-54P-201ENST00000516428 TTC37Q6PGP7 1564 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 DICER1Q9UPY3 1922 aaKnown RBP0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMCHD1A6NHR9 2005 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 RALGAPA1Q6GYQ0 2036 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 DISP2A7MBM2 1401 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 PTPRTO14522 1441 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 KDM6AO15550 1401 aaPredicted RBP0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 NAIPQ13075 1403 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARHGAP31Q2M1Z3 1444 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 PPIP5K1Q6PFW1 1433 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 FGD6Q6ZV73 1430 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRG4Q92954 1404 aaPredicted RBP0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 ERBINQ96RT1 1412 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 TRAPPC8Q9Y2L5 1435 aa0.4□□□□□ -2.34
RNU4-54P-201ENST00000516428 TOPBP1Q92547 1522 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 NISCHQ9Y2I1 1504 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 KMT2EQ8IZD2 1858 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 NAV1Q8NEY1 1877 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRPM1Q7Z4N2 1603 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRBV20OR9-2A0A075B6H5 130 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLV4-60A0A075B6I1 120 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV2-28A0A075B6P5 120 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A087WUU8 490 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A087WX48 190 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MEIKINA0A087WXM9 373 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3-49A0A0A0MS15 119 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3-21A0A0B4J1V1 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3-43A0A0B4J1X8 118 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV1-3A0A0C4DH29 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1-6A0A0C4DH72 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1-12A0A0C4DH73 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRBV7-6A0A0J9YX20 115 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3-64DA0A0J9YX35 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 KLF18A0A0U1RQI7 1052 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A1B0GV90 55 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 LOC102725191A0A1B0GVB3 256 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A1B0GVX0 72 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A1W2PP18 115 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IRGMA1A4Y4 181 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAM168BA1KXE4 195 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C9orf170A2RU37 121 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 GRIFINA4D1Z8 144 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM150BA6NC51 233 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IZUMO1RA6ND01 250 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 MEIS3P1A6NDR6 274 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TLCD2A6NGC4 264 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZFP92A6NM28 416 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM212A6NML5 194 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 A8MUN3 132 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 FABP5P3A8MUU1 101 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 KRTAP16-1A8MUX0 517 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLL5B9A064 214 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C4orf51C9J302 202 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C9JCJ5 164 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ATP6V1G2-DDX39BF2Z307 99 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 H0YJW9 148 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 J3QR89 54 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 K7ERS5 55 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 M0R2Z0 102 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 LST1O00453 97 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TXNDC9O14530 226 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 COX7A2LO14548 114 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TP53I11O14683 189 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 UBE2L6O14933 153 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 PLA2G10O15496 165 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CYB5BO43169 146 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 RBFOX2O43251 390 aaKnown RBP eCLIP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 BCL2L11O43521 198 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF207O43670 478 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAF3IP2O43734 574 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR7C2O60412 319 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF324O75467 553 aaPredicted RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 DPM2O94777 84 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 NDUFB2O95178 105 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 CDS2O95674 445 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 OR2H2O95918 312 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SOD1P00441 154 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 INSP01308 110 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1-39P01597 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1D-12P01611 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV2D-28P01615 120 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HLA-DQB1P01920 261 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 C1QAP02745 245 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRGC2P03986 189 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1D-39P04432 117 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 IFNA4P05014 189 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 S100A8P05109 93 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 HTR1AP08908 422 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SRP19P09132 144 aaKnown RBP0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 UCHL1P09936 223 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 SEC11BP0C7V7 166 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 METTL15P1P0C7V9 234 aa0.4□□□□□ -2.35
RNU4-54P-201ENST00000516428 LINC00869P0C866 280 aa0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms