RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FGF16O43320 207 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 CLPSP04118 112 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 RNF224P0DH78 156 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 OTX1P32242 354 aaPredicted RBP10.7□□□□□ -0.7
USP53-209ENST00000514665 GLRXP35754 106 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 CLDN18P56856 261 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 SCNM1Q9BWG6 230 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 TMEM56-RWDD3S4R434 201 aa10.7□□□□□ -0.7
USP53-209ENST00000514665 LOC102724200A0A096LPH7 203 aaPredicted RBP10.69□□□□□ -0.7
USP53-209ENST00000514665 TRBV6-7A0A0A0MS04 114 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 C9orf172C9J069 976 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 PPOXP50336 477 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 FHL1Q13642 323 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 C17orf82Q86X59 251 aaPredicted RBP10.69□□□□□ -0.7
USP53-209ENST00000514665 J3QW42 95 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 MOSP00540 346 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 GATA2P23769 480 aaPredicted RBP10.69□□□□□ -0.7
USP53-209ENST00000514665 ATP5G3P48201 142 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 RELBQ01201 579 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 Q1RN00 199 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 CYP2G1PQ6ZSU1 146 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 LHFPL1Q86WI0 220 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 CBLN4Q9NTU7 201 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 GCGP01275 180 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 HLA-DQA1P01909 254 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 HOXA4Q00056 320 aaPredicted RBP10.69□□□□□ -0.7
USP53-209ENST00000514665 CENPWQ5EE01 88 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 OR4C13Q8NGP0 309 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 SFRP2Q96HF1 295 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 GUCD1Q96NT3 240 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 WFDC1Q9HC57 220 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 TRAV24A0A0B4J272 114 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 CGAP01215 116 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 IL6RP08887 468 aaPredicted RBP10.69□□□□□ -0.7
USP53-209ENST00000514665 CRYGSP22914 178 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 NRN1LQ496H8 165 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 TMEM177Q53S58 311 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 ATOH7Q8N100 152 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 OR51G1Q8NGK1 321 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 CLDND2Q8NHS1 167 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 PGLYRP4Q96LB8 373 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 DIRC2Q96SL1 478 aa10.69□□□□□ -0.7
USP53-209ENST00000514665 COL4A6Q14031 1691 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 IGKV1-27A0A075B6S5 117 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.68□□□□□ -0.7
USP53-209ENST00000514665 OR2T8A6NH00 312 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 CD99P14209 185 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 FCGR2BP31994 310 aaPredicted RBP10.68□□□□□ -0.7
USP53-209ENST00000514665 ERVFRD-1P60508 538 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 ID3Q02535 119 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 PCSK4Q6UW60 755 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 C18orf12Q96KH6 178 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 RBM14Q96PK6 669 aaKnown RBP10.68□□□□□ -0.7
USP53-209ENST00000514665 ZNF729A6NN14 1252 aaPredicted RBP10.68□□□□□ -0.7
USP53-209ENST00000514665 M0QZK8 103 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 GGCTO75223 188 aaKnown RBP10.68□□□□□ -0.7
USP53-209ENST00000514665 RPLP1P05386 114 aaKnown RBP10.68□□□□□ -0.7
USP53-209ENST00000514665 HSPB7Q9UBY9 170 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 RFNGQ9Y644 331 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 PRR19A6NJB7 356 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 CGB1A6NKQ9 187 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 IFITM10A6NMD0 228 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 IFNL4K9M1U5 179 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 SCGB1C2P0DMR2 95 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 IGFBP2P18065 325 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 RPL24P83731 157 aaKnown RBP10.68□□□□□ -0.7
USP53-209ENST00000514665 BPIFA4PQ86YQ2 179 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 WFDC3Q8IUB2 231 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 OR4A5Q8NH83 315 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 NABP1Q96AH0 204 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 IMMP2LQ96T52 175 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 ZNF581Q9P0T4 197 aa10.68□□□□□ -0.7
USP53-209ENST00000514665 PCNX2A6NKB5 2137 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 MPZP25189 248 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 GTF3C1Q12789 2109 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 GLRX5Q86SX6 157 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 TMEM105Q8N8V8 129 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 C9orf106Q8NAJ2 232 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 OR9G1Q8NH87 305 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 RABAC1Q9UI14 185 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 IGHV2OR16-5A0A0B4J2B6 119 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 RAMP3O60896 148 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 FOXA3P55318 350 aaPredicted RBP10.67□□□□□ -0.7
USP53-209ENST00000514665 ZFP36L1Q07352 338 aaKnown RBP10.67□□□□□ -0.7
USP53-209ENST00000514665 CCDC144NLQ6NUI1 221 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 ZCCHC24Q8N2G6 241 aaKnown RBP10.67□□□□□ -0.7
USP53-209ENST00000514665 WDR31Q8NA23 367 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 GATAD1Q8WUU5 269 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 NEU1Q99519 415 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 GP6Q9HCN6 339 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 FOXD3Q9UJU5 478 aaPredicted RBP10.67□□□□□ -0.7
USP53-209ENST00000514665 ATXN7O15265 892 aaPredicted RBP10.67□□□□□ -0.7
USP53-209ENST00000514665 SOD3P08294 240 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 HINT1P49773 126 aaPredicted RBP10.67□□□□□ -0.7
USP53-209ENST00000514665 ACSF3Q4G176 576 aaPredicted RBP10.67□□□□□ -0.7
USP53-209ENST00000514665 WDYHV1Q96HA8 205 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 TMEM208Q9BTX3 173 aa10.67□□□□□ -0.7
USP53-209ENST00000514665 PPIAL4CA0A0B4J2A2 164 aa10.66□□□□□ -0.7
USP53-209ENST00000514665 WISP1O95388 367 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms