RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CXorf58Q96LI9 332 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 AGMATQ9BSE5 352 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 LINC00473A8K010 186 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 OR13C7P0DN81 318 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 HIST1H1BP16401 226 aaKnown RBP6.84□□□□□ -1.31
USP54-215ENST00000497106 SULT1A2P50226 295 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 DEFA6Q01524 100 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 OR11H6Q8NGC7 330 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 RNASEH2CQ8TDP1 164 aaKnown RBP6.84□□□□□ -1.31
USP54-215ENST00000497106 C10orf105Q8TEF2 133 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 GINS3Q9BRX5 216 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 MPTX1A8MV57 137 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 SRP14P37108 136 aaKnown RBP6.84□□□□□ -1.31
USP54-215ENST00000497106 TUSC1Q2TAM9 212 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 TEPPQ6URK8 271 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 UHRF2Q96PU4 802 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 SSX3Q99909 188 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 ZNF355PQ9NSJ1 428 aa6.84□□□□□ -1.31
USP54-215ENST00000497106 A0A1W2PRD5 423 aa6.84□□□□□ -1.32
USP54-215ENST00000497106 A0A1W2PRF3 423 aa6.84□□□□□ -1.32
USP54-215ENST00000497106 A0A1W2PRM7 423 aa6.84□□□□□ -1.32
USP54-215ENST00000497106 IGHV4-39P01824 125 aa6.84□□□□□ -1.32
USP54-215ENST00000497106 SELENOTP62341 195 aa6.84□□□□□ -1.32
USP54-215ENST00000497106 RPL19P84098 196 aaKnown RBP6.84□□□□□ -1.32
USP54-215ENST00000497106 CACNG8Q8WXS5 425 aa6.84□□□□□ -1.32
USP54-215ENST00000497106 C7orf69Q9H7B7 122 aa6.84□□□□□ -1.32
USP54-215ENST00000497106 ZFP92A6NM28 416 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 CFDP00746 253 aaPredicted RBP6.83□□□□□ -1.32
USP54-215ENST00000497106 MSMBP08118 114 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 RNF224P0DH78 156 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 TMEM41BQ5BJD5 291 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 C9orf152Q5JTZ5 239 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 BTNL8Q6UX41 500 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 PARD6GQ9BYG4 376 aaPredicted RBP6.83□□□□□ -1.32
USP54-215ENST00000497106 MED9Q9NWA0 146 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 IGSF23A1L1A6 192 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 KIAA1324LA8MWY0 1029 aaPredicted RBP6.83□□□□□ -1.32
USP54-215ENST00000497106 H0YIZ8 118 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 NPBWR1P48145 328 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 PSMB3P49720 205 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 ZNF137PP52743 207 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 NHLH2Q02577 135 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 PFDN5Q99471 154 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 KCNAB3O43448 404 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 GPX4P36969 197 aaPredicted RBP6.83□□□□□ -1.32
USP54-215ENST00000497106 ELLP55199 621 aaPredicted RBP6.83□□□□□ -1.32
USP54-215ENST00000497106 FFAR4Q5NUL3 377 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 BPIFCQ8NFQ6 507 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 C19orf24Q9BVV8 132 aa6.83□□□□□ -1.32
USP54-215ENST00000497106 LAMA2P24043 3122 aaKnown RBP6.83□□□□□ -1.32
USP54-215ENST00000497106 IGHV3-72A0A0B4J1Y9 119 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 FNDC10F2Z333 226 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 LY6HO94772 140 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 IGKV1D-33P01593 117 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 IGKV1-33P01594 117 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 OR9G9P0C7N8 305 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 ATP6V0CP27449 155 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 RHOBP62745 196 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 RELBQ01201 579 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 IL15RAQ13261 267 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 SPINK9Q5DT21 86 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 C5orf24Q7Z6I8 188 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 LY6G5BQ8NDX9 201 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 SFT2D1Q8WV19 159 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 MISP3Q96FF7 219 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 SMDT1Q9H4I9 107 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 COL6A6A6NMZ7 2263 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 TRAV30A0A087WSZ9 112 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 MFSD2BA6NFX1 497 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 OVOL3O00110 214 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 RRHO14718 337 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 NPFFO15130 113 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 TAS2R60P59551 318 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 MAJINQ3KP22 176 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 CYB5R2Q6BCY4 276 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 SLC45A2Q9UMX9 530 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 NCOR2Q9Y618 2525 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 TNFRSF13BO14836 293 aaPredicted RBP6.82□□□□□ -1.32
USP54-215ENST00000497106 PJVKQ0ZLH3 352 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 STPG2Q8N412 459 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 TAF15Q92804 592 aaKnown RBP eCLIP6.82□□□□□ -1.32
USP54-215ENST00000497106 DMRT1Q9Y5R6 373 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 C22orf46C9J442 243 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 TIMM23O14925 209 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 COX7A2P2O60397 106 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 CDSNQ15517 529 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 DEFB113Q30KQ7 82 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 AARDQ4LEZ3 155 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 ACSM6Q6P461 480 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 PPP1R27Q86WC6 154 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 PUSL1Q8N0Z8 303 aaKnown RBP6.82□□□□□ -1.32
USP54-215ENST00000497106 ACY3Q96HD9 319 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 NIT2Q9NQR4 276 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 IGF2RP11717 2491 aa6.82□□□□□ -1.32
USP54-215ENST00000497106 Q6ZPA2 131 aa6.81□□□□□ -1.32
USP54-215ENST00000497106 VKORC1L1Q8N0U8 176 aa6.81□□□□□ -1.32
USP54-215ENST00000497106 HOXA4Q00056 320 aaPredicted RBP6.81□□□□□ -1.32
USP54-215ENST00000497106 PSG5Q15238 335 aa6.81□□□□□ -1.32
USP54-215ENST00000497106 PRSS8Q16651 343 aa6.81□□□□□ -1.32
USP54-215ENST00000497106 LRRC75BQ2VPJ9 315 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms