RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 TM4SF1P30408 202 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 UBE2E1P51965 193 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 EPDR1Q9UM22 224 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 MYO5CQ9NQX4 1742 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 PRSS42Q7Z5A4 293 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 DKK4Q9UBT3 224 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 COA3Q9Y2R0 106 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 ADCY10Q96PN6 1610 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 CDK5RAP2Q96SN8 1893 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 ZNF121P58317 390 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 PTCRAQ6ISU1 281 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 GSN-AS1Q9NRJ2 163 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 C20orf141Q9NUB4 165 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 SIGLEC8Q9NYZ4 499 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 AJAP1Q9UKB5 411 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 TP53BP1Q12888 1972 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 CEP170BQ9Y4F5 1589 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 ZNF608Q9ULD9 1512 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 SYNJ2BPP57105 145 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 ZIC1Q15915 447 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 ZNF664Q8N3J9 261 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 SSMEM1Q8WWF3 244 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 SPTBN2O15020 2390 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 PAX8Q06710 450 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 WDR82Q6UXN9 313 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 DYNAPQ8N1N2 210 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 TTC9BQ8N6N2 239 aa5.01□□□□□ -1.61
USF3-204ENST00000496826 SRSF12Q8WXF0 261 aaKnown RBP5.01□□□□□ -1.61
USF3-204ENST00000496826 TRPM1Q7Z4N2 1603 aa5□□□□□ -1.61
USF3-204ENST00000496826 CLPSP04118 112 aa5□□□□□ -1.61
USF3-204ENST00000496826 TDRD6O60522 2096 aaKnown RBP5□□□□□ -1.61
USF3-204ENST00000496826 TFPI2P48307 235 aa5□□□□□ -1.61
USF3-204ENST00000496826 TNFRSF9Q07011 255 aa5□□□□□ -1.61
USF3-204ENST00000496826 FOXC1Q12948 553 aa5□□□□□ -1.61
USF3-204ENST00000496826 FBXW9Q5XUX1 488 aa5□□□□□ -1.61
USF3-204ENST00000496826 TMEM88Q6PEY1 159 aa5□□□□□ -1.61
USF3-204ENST00000496826 CMC2Q9NRP2 79 aa5□□□□□ -1.61
USF3-204ENST00000496826 FER1L6Q2WGJ9 1857 aa5□□□□□ -1.61
USF3-204ENST00000496826 NDUFC1O43677 76 aa5□□□□□ -1.61
USF3-204ENST00000496826 ZNF680Q8NEM1 530 aa5□□□□□ -1.61
USF3-204ENST00000496826 SMIM4Q8WVI0 70 aa5□□□□□ -1.61
USF3-204ENST00000496826 ZNF385DQ9H6B1 395 aa5□□□□□ -1.61
USF3-204ENST00000496826 ZFP36L2P47974 494 aaKnown RBP5□□□□□ -1.61
USF3-204ENST00000496826 RPS26P62854 115 aaKnown RBP5□□□□□ -1.61
USF3-204ENST00000496826 HAMPP81172 84 aa5□□□□□ -1.61
USF3-204ENST00000496826 TM4SF18Q96CE8 201 aa5□□□□□ -1.61
USF3-204ENST00000496826 DDA1Q9BW61 102 aa5□□□□□ -1.61
USF3-204ENST00000496826 SPATA31B1PQ5VZV4 182 aa5□□□□□ -1.61
USF3-204ENST00000496826 CLEC7AQ9BXN2 247 aa5□□□□□ -1.61
USF3-204ENST00000496826 ZNF275Q9NSD4 429 aaPredicted RBP5□□□□□ -1.61
USF3-204ENST00000496826 DDTP30046 118 aa5□□□□□ -1.61
USF3-204ENST00000496826 SCARF2Q96GP6 870 aaPredicted RBP5□□□□□ -1.61
USF3-204ENST00000496826 IL17FQ96PD4 163 aa5□□□□□ -1.61
USF3-204ENST00000496826 TMEM243Q9BU79 118 aa5□□□□□ -1.61
USF3-204ENST00000496826 R4GN57 208 aa5□□□□□ -1.61
USF3-204ENST00000496826 TCRBV4S1A1TA0A5B7 111 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 FABP5P3A8MUU1 101 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 GAGE7O76087 117 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 LINC00614P0C842 121 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 GAGE12FP0CL80 117 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 GAGE12GP0CL81 117 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 GAGE12IP0CL82 117 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 ETDBQ3ZM63 59 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 ZNF503Q96F45 646 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 SRSF8Q9BRL6 282 aaKnown RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 ZIC3O60481 467 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 STATHP02808 62 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 OR9G9P0C7N8 305 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 COX5BP10606 129 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 TMEM52Q8NDY8 209 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 MARVELD3Q96A59 401 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 NAA38Q9BRA0 125 aaKnown RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 RALGAPA1Q6GYQ0 2036 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 TM4SF5O14894 197 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 TRGV3P03979 118 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 CFPP27918 469 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 DAPP51397 102 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 SUPT4H1P63272 117 aaKnown RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 TCF15Q12870 199 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 FGF11Q92914 225 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 KLK5Q9Y337 293 aaPredicted RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 NRXN1Q9ULB1 1477 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 N4BP2Q86UW6 1770 aaPredicted RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 TMSB15BA0A087X1C1 80 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 NDUFA4O00483 81 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 PRCDQ00LT1 54 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 C1orf220Q5T0J3 134 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 C3orf56Q8N813 242 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 FER1L6-AS1Q8NA97 138 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 FAM163AQ96GL9 167 aaPredicted RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 DMRT1Q9Y5R6 373 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 MTCL1Q9Y4B5 1905 aaKnown RBP4.99□□□□□ -1.61
USF3-204ENST00000496826 SLIT1O75093 1534 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 LOC105371242A0A075B767 164 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 CCL21O00585 134 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 PTP4A3O75365 173 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 IGKCP01834 107 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 ODF1Q14990 250 aa4.99□□□□□ -1.61
USF3-204ENST00000496826 MARCH3Q86UD3 253 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms